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non port: biology/bowtie2/Makefile
SVNWeb

Number of commits found: 7

Thu, 30 Nov 2017
[ 02:59 jwb ] Original commit   Revision:455161
455161 biology/bowtie2/Makefile
455161 biology/bowtie2/distinfo
455161 biology/bowtie2/files/patch-Makefile
455161 biology/bowtie2/files/patch-aligner__result.cpp
455161 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.3.1

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D13300
Sun, 17 Sep 2017
[ 07:03 martymac ] Original commit   Revision:449986
449986 archivers/par2cmdline-tbb/Makefile
449986 biology/bowtie2/Makefile
449986 cad/opencascade/Makefile
449986 devel/ispc/Makefile
449986 devel/tbb/Makefile
449986 devel/tbb/distinfo
449986 devel/tbb/pkg-plist
449986 graphics/opencv/Makefile
449986 math/saga/Makefile
Update tbb to 2018 and bump dependent ports' revisions
Tue, 7 Mar 2017
[ 12:44 martymac ] Original commit   Revision:435599
435599 archivers/par2cmdline-tbb/Makefile
435599 biology/bowtie2/Makefile
435599 cad/opencascade/Makefile
435599 devel/tbb/Makefile
435599 devel/tbb/distinfo
435599 devel/tbb/files/patch-build-FreeBSD.inc
435599 devel/tbb/files/patch-common.inc
435599 devel/tbb/pkg-plist
435599 graphics/opencv2/Makefile
435599 math/saga/Makefile
Update devel/tbb to 2017.5

Also bring the following changes:
- Fetch distfiles from Github
- Bump dependent ports' PORTREVISIONs
Mon, 27 Feb 2017
[ 14:08 jbeich ] Original commit   Revision:434940
434940 biology/bowtie2/Makefile
434940 biology/bowtie2/distinfo
434940 biology/bowtie2/files/patch-Makefile
434940 biology/bowtie2/files/patch-aligner__result.cpp
biology/bowtie2: update to 2.3.0

- Unbreak with Clang 4.0

Changes:	https://github.com/BenLangmead/bowtie2/releases/tag/v2.3.0
PR:		216619
Submitted by:	Jason Bacon <bacon4000@gmail.com> (maintainer)
Tue, 20 Dec 2016
[ 17:01 jrm ] Original commit   Revision:429003
429003 biology/bowtie2/Makefile
429003 biology/bowtie2/distinfo
biology/bowtie2: Update to version 2.2.9

- Update license information.
- Add python to USES (bowtie2-build bowtie2-inspect need python)
- Add DOCS and EXAMPLES options

Approved by:	AMDmi3 (mentor) swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8182
Fri, 13 May 2016
[ 20:12 pi ] Original commit   Revision:415148
415148 biology/bowtie2/Makefile
415148 biology/bowtie2/distinfo
biology/bowtie2: 2.2.7 -> 2.2.8

- Various website updates
- Fixed the bowtie2-build issue that made TBB compilation fail

PR:		208943
Submitted by:	Joseph Mingrone <jrm@ftfl.ca>
Approved by:	Jason Bacon <bacon4000@gmail.com> (maintainer)
Wed, 23 Mar 2016
[ 11:22 rakuco ] Original commit   Revision:411698
411698 biology/Makefile
411698 biology/bowtie2
411698 biology/bowtie2/Makefile
411698 biology/bowtie2/distinfo
411698 biology/bowtie2/files
411698 biology/bowtie2/files/patch-Makefile
411698 biology/bowtie2/pkg-descr
411698 biology/bowtie2/pkg-plist
New port: biology/bowtie2.

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour.

This is Bowtie version 2, which will need to coexists with Bowtie 1 for the
foreseeable future. Both are required by certain genomics pipelines, in some
cases (e.g. Trinity) by the same pipeline.

WWW: https://github.com/BenLangmead/bowtie2

PR:		207908
Submitted by:	Jason Bacon <bacon4000@gmail.com>

Number of commits found: 7

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