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non port: biology/bowtie2/Makefile
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Number of commits found: 14

Wed, 25 Sep 2019
[ 10:03 martymac ] Original commit   Revision:512777
512777 archivers/par2cmdline-tbb/Makefile
512777 biology/bowtie2/Makefile
512777 cad/opencascade/Makefile
512777 devel/blitz/Makefile
512777 devel/ispc/Makefile
512777 devel/py-numba/Makefile
512777 devel/tbb/Makefile
512777 devel/tbb/distinfo
512777 devel/tbb/pkg-plist
512777 graphics/blender/Makefile

(Only the first 10 of 24 ports in this commit are shown above. View all ports for this commit)
Update devel/tbb to 2019.8 and bump dependent ports' revisions

Changelog: https://github.com/intel/tbb/blob/tbb_2019/CHANGES
Wed, 24 Apr 2019
[ 17:41 jwb ] Original commit   Revision:499873
499873 biology/bowtie2/Makefile
biology/bowtie2: Clarify CPU-specificity
Sun, 21 Apr 2019
[ 15:23 jwb ] Original commit   Revision:499544
499544 biology/bowtie2/Makefile
499544 biology/bowtie2/distinfo
499544 biology/bowtie2/files/patch-Makefile
499544 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.5.1

Disable aarch64.  Upstream support has changed and I lack the resources
to develop new patches.
Fri, 29 Mar 2019
[ 22:13 linimon ] Original commit   Revision:497212
497212 biology/bowtie2/Makefile
Mark as broken on aarch64:

  usage: dirname string [...]

My guess is that some parameter is being passed the empty string.

Approved by:	portmgr (tier-2 blanket)
Mon, 18 Mar 2019
[ 17:30 jwb ] Original commit   Revision:496155
496155 biology/bowtie2/Makefile
496155 biology/bowtie2/distinfo
496155 biology/bowtie2/files/bowtie2-test.in
496155 biology/bowtie2/files/patch-Makefile
496155 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.5

-   Add bowtie2-test script
-   Separate Makefile patches into a static patch for upstream and reinplace
    for ports-specifics
-   Allow aarch64 per upstream Makefile (untested)
Thu, 11 Oct 2018
[ 14:47 martymac ] Original commit   Revision:481833
481833 archivers/par2cmdline-tbb/Makefile
481833 biology/bowtie2/Makefile
481833 cad/opencascade/Makefile
481833 devel/blitz/Makefile
481833 devel/ispc/Makefile
481833 devel/tbb/Makefile
481833 devel/tbb/distinfo
481833 devel/tbb/pkg-plist
481833 graphics/instant-meshes/Makefile
481833 graphics/nomacs/Makefile

(Only the first 10 of 17 ports in this commit are shown above. View all ports for this commit)
Update devel/tbb to version 2019.1 and bump dependent ports' revisions

Also, reintegrate HTML documentation that was removed in previous version.
Thu, 4 Oct 2018
[ 10:03 martymac ] Original commit   Revision:481215
481215 archivers/par2cmdline-tbb/Makefile
481215 biology/bowtie2/Makefile
481215 cad/opencascade/Makefile
481215 devel/blitz/Makefile
481215 devel/ispc/Makefile
481215 devel/tbb/Makefile
481215 devel/tbb/distinfo
481215 devel/tbb/files/patch-build-BSD.inc
481215 devel/tbb/files/patch-build-FreeBSD.inc
481215 devel/tbb/pkg-plist

(Only the first 10 of 19 ports in this commit are shown above. View all ports for this commit)
Update devel/tbb to version 2019 and bump dependent port's revisions
Thu, 30 Nov 2017
[ 02:59 jwb ] Original commit   Revision:455161
455161 biology/bowtie2/Makefile
455161 biology/bowtie2/distinfo
455161 biology/bowtie2/files/patch-Makefile
455161 biology/bowtie2/files/patch-aligner__result.cpp
455161 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.3.1

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D13300
Sun, 17 Sep 2017
[ 07:03 martymac ] Original commit   Revision:449986
449986 archivers/par2cmdline-tbb/Makefile
449986 biology/bowtie2/Makefile
449986 cad/opencascade/Makefile
449986 devel/ispc/Makefile
449986 devel/tbb/Makefile
449986 devel/tbb/distinfo
449986 devel/tbb/pkg-plist
449986 graphics/opencv/Makefile
449986 math/saga/Makefile
Update tbb to 2018 and bump dependent ports' revisions
Tue, 7 Mar 2017
[ 12:44 martymac ] Original commit   Revision:435599
435599 archivers/par2cmdline-tbb/Makefile
435599 biology/bowtie2/Makefile
435599 cad/opencascade/Makefile
435599 devel/tbb/Makefile
435599 devel/tbb/distinfo
435599 devel/tbb/files/patch-build-FreeBSD.inc
435599 devel/tbb/files/patch-common.inc
435599 devel/tbb/pkg-plist
435599 graphics/opencv2/Makefile
435599 math/saga/Makefile
Update devel/tbb to 2017.5

Also bring the following changes:
- Fetch distfiles from Github
- Bump dependent ports' PORTREVISIONs
Mon, 27 Feb 2017
[ 14:08 jbeich ] Original commit   Revision:434940
434940 biology/bowtie2/Makefile
434940 biology/bowtie2/distinfo
434940 biology/bowtie2/files/patch-Makefile
434940 biology/bowtie2/files/patch-aligner__result.cpp
biology/bowtie2: update to 2.3.0

- Unbreak with Clang 4.0

Changes:	https://github.com/BenLangmead/bowtie2/releases/tag/v2.3.0
PR:		216619
Submitted by:	Jason Bacon <bacon4000@gmail.com> (maintainer)
Tue, 20 Dec 2016
[ 17:01 jrm ] Original commit   Revision:429003
429003 biology/bowtie2/Makefile
429003 biology/bowtie2/distinfo
biology/bowtie2: Update to version 2.2.9

- Update license information.
- Add python to USES (bowtie2-build bowtie2-inspect need python)
- Add DOCS and EXAMPLES options

Approved by:	AMDmi3 (mentor) swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8182
Fri, 13 May 2016
[ 20:12 pi ] Original commit   Revision:415148
415148 biology/bowtie2/Makefile
415148 biology/bowtie2/distinfo
biology/bowtie2: 2.2.7 -> 2.2.8

- Various website updates
- Fixed the bowtie2-build issue that made TBB compilation fail

PR:		208943
Submitted by:	Joseph Mingrone <jrm@ftfl.ca>
Approved by:	Jason Bacon <bacon4000@gmail.com> (maintainer)
Wed, 23 Mar 2016
[ 11:22 rakuco ] Original commit   Revision:411698
411698 biology/Makefile
411698 biology/bowtie2
411698 biology/bowtie2/Makefile
411698 biology/bowtie2/distinfo
411698 biology/bowtie2/files
411698 biology/bowtie2/files/patch-Makefile
411698 biology/bowtie2/pkg-descr
411698 biology/bowtie2/pkg-plist
New port: biology/bowtie2.

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour.

This is Bowtie version 2, which will need to coexists with Bowtie 1 for the
foreseeable future. Both are required by certain genomics pipelines, in some
cases (e.g. Trinity) by the same pipeline.

WWW: https://github.com/BenLangmead/bowtie2

PR:		207908
Submitted by:	Jason Bacon <bacon4000@gmail.com>

Number of commits found: 14

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