notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

Hardware failure

The website is running on the old server. The new server stopped working at about 0200 UTC on 2020-08-22. The database was restored from 2020-08-21 00:59:15+00 UTC. We think we have covered all commits. Nothing should be missing. Any changes you made to your accounts after the restore date will be lost. Sorry about that.
non port: biology/bowtie2/distinfo
SVNWeb

Number of commits found XX: 9

Sat, 7 Nov 2020
[ 13:47 jwb ] Original commit   Revision:554390
554390 biology/bowtie2/Makefile
554390 biology/bowtie2/distinfo
554390 biology/bowtie2/files/patch-Makefile
biology/bowtie2: Upgrade to 2.4.2

Minor bug fix release

Reported by:    portscout
Sun, 1 Mar 2020
[ 16:01 jwb ] Original commit   Revision:527560
527560 biology/bowtie2/Makefile
527560 biology/bowtie2/distinfo
527560 biology/bowtie2/files/patch-Makefile
biology/bowtie2: Upgrade to 2.4.1

Numerous bugfixes and enhancements
Enable experimental support for aarch64

Reported by:    portscout
Sun, 21 Apr 2019
[ 15:23 jwb ] Original commit   Revision:499544
499544 biology/bowtie2/Makefile
499544 biology/bowtie2/distinfo
499544 biology/bowtie2/files/patch-Makefile
499544 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.5.1

Disable aarch64.  Upstream support has changed and I lack the resources
to develop new patches.
Mon, 18 Mar 2019
[ 17:30 jwb ] Original commit   Revision:496155
496155 biology/bowtie2/Makefile
496155 biology/bowtie2/distinfo
496155 biology/bowtie2/files/bowtie2-test.in
496155 biology/bowtie2/files/patch-Makefile
496155 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.5

-   Add bowtie2-test script
-   Separate Makefile patches into a static patch for upstream and reinplace
    for ports-specifics
-   Allow aarch64 per upstream Makefile (untested)
Thu, 30 Nov 2017
[ 02:59 jwb ] Original commit   Revision:455161
455161 biology/bowtie2/Makefile
455161 biology/bowtie2/distinfo
455161 biology/bowtie2/files/patch-Makefile
455161 biology/bowtie2/files/patch-aligner__result.cpp
455161 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.3.1

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D13300
Mon, 27 Feb 2017
[ 14:08 jbeich ] Original commit   Revision:434940
434940 biology/bowtie2/Makefile
434940 biology/bowtie2/distinfo
434940 biology/bowtie2/files/patch-Makefile
434940 biology/bowtie2/files/patch-aligner__result.cpp
biology/bowtie2: update to 2.3.0

- Unbreak with Clang 4.0

Changes:	https://github.com/BenLangmead/bowtie2/releases/tag/v2.3.0
PR:		216619
Submitted by:	Jason Bacon <bacon4000@gmail.com> (maintainer)
Tue, 20 Dec 2016
[ 17:01 jrm ] Original commit   Revision:429003
429003 biology/bowtie2/Makefile
429003 biology/bowtie2/distinfo
biology/bowtie2: Update to version 2.2.9

- Update license information.
- Add python to USES (bowtie2-build bowtie2-inspect need python)
- Add DOCS and EXAMPLES options

Approved by:	AMDmi3 (mentor) swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8182
Fri, 13 May 2016
[ 20:12 pi ] Original commit   Revision:415148
415148 biology/bowtie2/Makefile
415148 biology/bowtie2/distinfo
biology/bowtie2: 2.2.7 -> 2.2.8

- Various website updates
- Fixed the bowtie2-build issue that made TBB compilation fail

PR:		208943
Submitted by:	Joseph Mingrone <jrm@ftfl.ca>
Approved by:	Jason Bacon <bacon4000@gmail.com> (maintainer)
Wed, 23 Mar 2016
[ 11:22 rakuco ] Original commit   Revision:411698
411698 biology/Makefile
411698 biology/bowtie2
411698 biology/bowtie2/Makefile
411698 biology/bowtie2/distinfo
411698 biology/bowtie2/files
411698 biology/bowtie2/files/patch-Makefile
411698 biology/bowtie2/pkg-descr
411698 biology/bowtie2/pkg-plist
New port: biology/bowtie2.

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour.

This is Bowtie version 2, which will need to coexists with Bowtie 1 for the
foreseeable future. Both are required by certain genomics pipelines, in some
cases (e.g. Trinity) by the same pipeline.

WWW: https://github.com/BenLangmead/bowtie2

PR:		207908
Submitted by:	Jason Bacon <bacon4000@gmail.com>

Number of commits found XX: 9

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
xephyrDec 01
xorg-dmxDec 01
xorg-nestserverDec 01
xorg-serverDec 01
xorg-vfbserverDec 01
xwaylandDec 01
nomadNov 27
giteaNov 21
nodeNov 21
node12Nov 21
node14Nov 21
muttNov 20
mantisNov 14
goNov 12
py-saltNov 12

5 vulnerabilities affecting 48 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2020-12-02 10:04:43


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 41505
Broken 59
Deprecated 265
Ignore 298
Forbidden 4
Restricted 141
No CDROM 72
Vulnerable 19
Expired 8
Set to expire 235
Interactive 0
new 24 hours 1
new 48 hours4
new 7 days25
new fortnight61
new month172

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2020 Dan Langille. All rights reserved.