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SVNWeb
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Number of commits found XX: 9 |
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Sat, 7 Nov 2020
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[ 13:47 jwb ]  
554390 biology/bowtie2/Makefile
554390 biology/bowtie2/distinfo
554390 biology/bowtie2/files/patch-Makefile
biology/bowtie2: Upgrade to 2.4.2
Minor bug fix release
Reported by: portscout
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Sun, 1 Mar 2020
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[ 16:01 jwb ]
527560 biology/bowtie2/Makefile
527560 biology/bowtie2/distinfo
527560 biology/bowtie2/files/patch-Makefile
biology/bowtie2: Upgrade to 2.4.1
Numerous bugfixes and enhancements
Enable experimental support for aarch64
Reported by: portscout
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Sun, 21 Apr 2019
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[ 15:23 jwb ]
499544 biology/bowtie2/Makefile
499544 biology/bowtie2/distinfo
499544 biology/bowtie2/files/patch-Makefile
499544 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.5.1
Disable aarch64. Upstream support has changed and I lack the resources
to develop new patches.
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Mon, 18 Mar 2019
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[ 17:30 jwb ]
496155 biology/bowtie2/Makefile
496155 biology/bowtie2/distinfo
496155 biology/bowtie2/files/bowtie2-test.in
496155 biology/bowtie2/files/patch-Makefile
496155 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.5
- Add bowtie2-test script
- Separate Makefile patches into a static patch for upstream and reinplace
for ports-specifics
- Allow aarch64 per upstream Makefile (untested)
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Thu, 30 Nov 2017
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[ 02:59 jwb ]
455161 biology/bowtie2/Makefile
455161 biology/bowtie2/distinfo
455161 biology/bowtie2/files/patch-Makefile
455161 biology/bowtie2/files/patch-aligner__result.cpp
455161 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.3.1
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D13300
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Mon, 27 Feb 2017
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[ 14:08 jbeich ]
434940 biology/bowtie2/Makefile
434940 biology/bowtie2/distinfo
434940 biology/bowtie2/files/patch-Makefile
434940 biology/bowtie2/files/patch-aligner__result.cpp
biology/bowtie2: update to 2.3.0
- Unbreak with Clang 4.0
Changes: https://github.com/BenLangmead/bowtie2/releases/tag/v2.3.0
PR: 216619
Submitted by: Jason Bacon <bacon4000@gmail.com> (maintainer)
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Tue, 20 Dec 2016
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[ 17:01 jrm ]
429003 biology/bowtie2/Makefile
429003 biology/bowtie2/distinfo
biology/bowtie2: Update to version 2.2.9
- Update license information.
- Add python to USES (bowtie2-build bowtie2-inspect need python)
- Add DOCS and EXAMPLES options
Approved by: AMDmi3 (mentor) swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8182
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Fri, 13 May 2016
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[ 20:12 pi ]
415148 biology/bowtie2/Makefile
415148 biology/bowtie2/distinfo
biology/bowtie2: 2.2.7 -> 2.2.8
- Various website updates
- Fixed the bowtie2-build issue that made TBB compilation fail
PR: 208943
Submitted by: Joseph Mingrone <jrm@ftfl.ca>
Approved by: Jason Bacon <bacon4000@gmail.com> (maintainer)
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Wed, 23 Mar 2016
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[ 11:22 rakuco ]
411698 biology/Makefile
411698 biology/bowtie2
411698 biology/bowtie2/Makefile
411698 biology/bowtie2/distinfo
411698 biology/bowtie2/files
411698 biology/bowtie2/files/patch-Makefile
411698 biology/bowtie2/pkg-descr
411698 biology/bowtie2/pkg-plist
New port: biology/bowtie2.
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour.
This is Bowtie version 2, which will need to coexists with Bowtie 1 for the
foreseeable future. Both are required by certain genomics pipelines, in some
cases (e.g. Trinity) by the same pipeline.
WWW: https://github.com/BenLangmead/bowtie2
PR: 207908
Submitted by: Jason Bacon <bacon4000@gmail.com>
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Number of commits found XX: 9 |
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