| non port: biology/bowtie2/files/patch-Makefile |
Number of commits found: 12 |
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Saturday, 21 Jan 2023
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22:30 Jason W. Bacon (jwb) 
biology/bowtie2: Update to 2.5.1
A few minor fixes and enhancements
Changes: https://github.com/BenLangmead/bowtie2/tags
Reported by: portscout
    65ce3f1 |
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Wednesday, 9 Nov 2022
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22:50 Piotr Kubaj (pkubaj)
biology/bowtie2: fix build on powerpc64*
12c4982 |
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Friday, 4 Nov 2022
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23:49 Jason W. Bacon (jwb)
biology/bowtie2: Update to 2.5.0
Performance improvements and minor improvements
Changes: https://github.com/BenLangmead/bowtie2/tags
Reported by: portscout
f2f8bd7 |
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Monday, 17 May 2021
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23:40 Jason W. Bacon (jwb)
biology/bowtie2: Update to 2.4.3
Drop tbb dependency (upstream switched to C++ threads)
Add support for powerpc64
Reported by: portscout
Tested by: pkubaj (powerpc64*)
1effaac |
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Sunday, 18 Apr 2021
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15:53 Jason W. Bacon (jwb)
biology/bowtie2: Add support for powerpc64le
PR: 255092
Submitted by: pkubaj
48ddc73 |
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Saturday, 7 Nov 2020
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13:47 jwb
biology/bowtie2: Upgrade to 2.4.2
Minor bug fix release
Reported by: portscout
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Sunday, 1 Mar 2020
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16:01 jwb
biology/bowtie2: Upgrade to 2.4.1
Numerous bugfixes and enhancements
Enable experimental support for aarch64
Reported by: portscout
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Sunday, 21 Apr 2019
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15:23 jwb
biology/bowtie2: Upgrade to 2.3.5.1
Disable aarch64. Upstream support has changed and I lack the resources
to develop new patches.
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Monday, 18 Mar 2019
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17:30 jwb
biology/bowtie2: Upgrade to 2.3.5
- Add bowtie2-test script
- Separate Makefile patches into a static patch for upstream and reinplace
for ports-specifics
- Allow aarch64 per upstream Makefile (untested)
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Thursday, 30 Nov 2017
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02:59 jwb
biology/bowtie2: Upgrade to 2.3.3.1
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D13300
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Monday, 27 Feb 2017
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14:08 jbeich
biology/bowtie2: update to 2.3.0
- Unbreak with Clang 4.0
Changes: https://github.com/BenLangmead/bowtie2/releases/tag/v2.3.0
PR: 216619
Submitted by: Jason Bacon <bacon4000@gmail.com> (maintainer)
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Wednesday, 23 Mar 2016
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11:22 rakuco
New port: biology/bowtie2.
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour.
This is Bowtie version 2, which will need to coexists with Bowtie 1 for the
foreseeable future. Both are required by certain genomics pipelines, in some
cases (e.g. Trinity) by the same pipeline.
WWW: https://github.com/BenLangmead/bowtie2
PR: 207908
Submitted by: Jason Bacon <bacon4000@gmail.com>
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Number of commits found: 12 |
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