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Things are slow!

Some of the pages ont the website are slow. I know diskio is way up. I don't know what it is but it's been going on for about three weeks. It might have been a change to the zpool recordsize on the PostgreSQL database dataset.

One way to know: copy the dataset to another dataset with the original recordsize and use that. I hope can get to that later this week.

I have not tackled the issue yet because I've been concentrating on the BSDCan and PGCon calls for papers.

non port: biology/bowtie2/files/patch-Makefile

Number of commits found: 5

Sun, 21 Apr 2019
[ 15:23 jwb ] Original commit   Revision:499544
499544 biology/bowtie2/Makefile
499544 biology/bowtie2/distinfo
499544 biology/bowtie2/files/patch-Makefile
499544 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to

Disable aarch64.  Upstream support has changed and I lack the resources
to develop new patches.
Mon, 18 Mar 2019
[ 17:30 jwb ] Original commit   Revision:496155
496155 biology/bowtie2/Makefile
496155 biology/bowtie2/distinfo
496155 biology/bowtie2/files/
496155 biology/bowtie2/files/patch-Makefile
496155 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to 2.3.5

-   Add bowtie2-test script
-   Separate Makefile patches into a static patch for upstream and reinplace
    for ports-specifics
-   Allow aarch64 per upstream Makefile (untested)
Thu, 30 Nov 2017
[ 02:59 jwb ] Original commit   Revision:455161
455161 biology/bowtie2/Makefile
455161 biology/bowtie2/distinfo
455161 biology/bowtie2/files/patch-Makefile
455161 biology/bowtie2/files/patch-aligner__result.cpp
455161 biology/bowtie2/pkg-plist
biology/bowtie2: Upgrade to

Approved by: jrm (mentor)
Differential Revision:
Mon, 27 Feb 2017
[ 14:08 jbeich ] Original commit   Revision:434940
434940 biology/bowtie2/Makefile
434940 biology/bowtie2/distinfo
434940 biology/bowtie2/files/patch-Makefile
434940 biology/bowtie2/files/patch-aligner__result.cpp
biology/bowtie2: update to 2.3.0

- Unbreak with Clang 4.0

PR:		216619
Submitted by:	Jason Bacon <> (maintainer)
Wed, 23 Mar 2016
[ 11:22 rakuco ] Original commit   Revision:411698
411698 biology/Makefile
411698 biology/bowtie2
411698 biology/bowtie2/Makefile
411698 biology/bowtie2/distinfo
411698 biology/bowtie2/files
411698 biology/bowtie2/files/patch-Makefile
411698 biology/bowtie2/pkg-descr
411698 biology/bowtie2/pkg-plist
New port: biology/bowtie2.

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour.

This is Bowtie version 2, which will need to coexists with Bowtie 1 for the
foreseeable future. Both are required by certain genomics pipelines, in some
cases (e.g. Trinity) by the same pipeline.


PR:		207908
Submitted by:	Jason Bacon <>

Number of commits found: 5

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