Port details on branch 2022Q3 |
- canu Single molecule sequence assembler
- 2.2_3 biology =0 2.2_3Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2017-12-22 01:30:37
- Last Update: 2023-07-20 17:42:34
- Commit Hash: d92c080
- Also Listed In: java perl5
- License: GPLv2
- WWW:
- https://canu.readthedocs.io/
- Description:
- Canu is a fork of the Celera Assembler, designed for high-noise single-molecule
sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
Detect overlaps in high-noise sequences using MHAP
Generate corrected sequence consensus
Trim corrected sequences
Assemble trimmed corrected sequences
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/canu/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/canu
- pkg install canu
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: canu
- Flavors: there is no flavor information for this port.
- NOT_FOR_ARCHS: armv6 armv7 i386 mips powerpc powerpcspe
- distinfo:
- TIMESTAMP = 1639774550
SHA256 (canu-2.2.tar.xz) = e4d0c7b82149114f442ccd39e18f7fe2061c63b28d53700ad896e022b73b7404
SIZE (canu-2.2.tar.xz) = 2400192
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- gnuplot : math/gnuplot
- java : java/openjdk8
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Library dependencies:
-
- libboost_regex.so : devel/boost-libs
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_canu
- USES:
- compiler:c++11-lang gmake localbase perl5 tar:xz
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|