non port: biology/canu/Makefile |
SVNWeb
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Number of commits found: 29 |
Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Fri, 12 Aug 2022
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[ 14:46 Dima Panov (fluffy) ] 4cf39de (Only the first 10 of 722 ports in this commit are shown above. )
*/*: bump all consumers after recent boost upgrade
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Sun, 22 May 2022
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[ 20:17 Dima Panov (fluffy) ] b082b3d (Only the first 10 of 280 ports in this commit are shown above. )
devel/boost-all: bump all library consumers after boost upgrade
PR: 246106
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Mon, 20 Dec 2021
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[ 12:59 Antoine Brodin (antoine) ] b2dab38
biology/canu: fix CATEGORIES
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Sun, 19 Dec 2021
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[ 21:06 Jason W. Bacon (jwb) ] b9105b7 (Only the first 10 of 11 ports in this commit are shown above. )
biology/canu: Update to 2.2
FreeBSD port: Add support for aarch64 and powerpc64 using simde
Not yet supported upstream
Several upstream bug fixes and minor enhancements since 2.1
Changes: https://github.com/marbl/canu/tags
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Wed, 7 Apr 2021
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[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Mon, 11 Jan 2021
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[ 16:51 jwb ]
biology/canu: Drop dependency on gcc
Replace compiler:openmp with compiler:c++11-lang and localbase
PR: port/247753, ports/252379
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Mon, 14 Sep 2020
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[ 22:27 jwb ]
biology/canu: Upgrade to 2.1
Numerous functional improvements for ease of use and output quality
A few bug fixes
Reported by: portscout
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Sun, 17 May 2020
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[ 02:25 linimon ]
Mark as BROKEN on powerpc64:
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:81:5: error:
'get_deleter' declared as a 'virtual' field
This may have something to do with compiler:openmp in USES. However,
it has broken for more than 6 months at this point.
Approved by: portmgr (tier-2 blanket)
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Fri, 20 Mar 2020
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[ 18:14 jwb ]
biology/canu: Upgrade to 2.0
Several routine enhancements and bug fixes
Reported by: portscout
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Wed, 11 Dec 2019
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[ 17:53 jbeich ] (Only the first 10 of 417 ports in this commit are shown above. )
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136
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Fri, 8 Nov 2019
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[ 14:03 jwb ]
biology/canu: Upgrade to 1.9
Numerous bug fixes and enhancements
Reported by: portscout
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Mon, 19 Aug 2019
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[ 15:35 jbeich ] (Only the first 10 of 412 ports in this commit are shown above. )
devel/boost-*: update to 1.71.0
Changes: http://www.boost.org/users/history/version_1_71_0.html
PR: 238827
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D20774
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Fri, 26 Jul 2019
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[ 20:46 gerald ] (Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
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Thu, 18 Apr 2019
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[ 12:15 jwb ]
biology/canu: Fix build on powerpc64 and aarch64
Should also work on powerpc and arm*, but unable to test
PR: 237105
Reported by: pkubaj
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Fri, 12 Apr 2019
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[ 06:36 jbeich ] (Only the first 10 of 392 ports in this commit are shown above. )
devel/boost-*: update to 1.70.0
Changes: http://www.boost.org/users/history/version_1_70_0.html
PR: 235956
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D19303
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Wed, 12 Dec 2018
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[ 01:35 gerald ] (Only the first 10 of 3168 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
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[ 00:15 jbeich ] (Only the first 10 of 415 ports in this commit are shown above. )
devel/boost-*: update to 1.69.0
Changes: http://www.boost.org/users/history/version_1_69_0.html
PR: 232525
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D17645
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Sun, 4 Nov 2018
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[ 14:29 jwb ]
biology/canu: Upgrade to 1.8, add experimental SLURM integration
Solves build issue with gcc8.
PR: 232930
Reported by: gerald
Approved by: jrm (mentor, implicit)
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Thu, 9 Aug 2018
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[ 06:58 jbeich ] (Only the first 10 of 404 ports in this commit are shown above. )
devel/boost-*: update to 1.68.0
- Switch to C++14 for libboost_system to support C++14 consumers
Changes: http://www.boost.org/users/history/version_1_68_0.html
PR: 229569
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D16165
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Sun, 29 Jul 2018
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[ 22:18 gerald ] (Only the first 10 of 1480 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542
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Thu, 21 Jun 2018
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[ 23:52 linimon ] (Only the first 10 of 19 ports in this commit are shown above. )
Mark as broken on aarch64, and, where appropriate, armvX.
While here, pet portlint.
Approved by: portmgr (tier-2 blanket)
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Thu, 26 Apr 2018
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[ 04:16 jwb ]
biology/canu: Upgrade to 1.7 release
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D15201
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Wed, 18 Apr 2018
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[ 13:57 jbeich ] (Only the first 10 of 388 ports in this commit are shown above. )
devel/boost-*: update to 1.67.0
Changes: http://www.boost.org/users/history/version_1_67_0.html
PR: 227427
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D15030
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Sat, 10 Mar 2018
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[ 17:46 gerald ] (Only the first 10 of 1104 ports in this commit are shown above. )
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
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Thu, 18 Jan 2018
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[ 04:11 jbeich ] (Only the first 10 of 356 ports in this commit are shown above. )
devel/boost-*: update to 1.66.0
Changes: http://www.boost.org/users/history/version_1_66_0.html
PR: 223922
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D13279
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Fri, 22 Dec 2017
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[ 14:14 jwb ]
biology/canu: Replace += with = for depends
Approved by: jrm
Differential Revision: https://reviews.freebsd.org/D13574
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[ 01:30 jwb ]
[new port] biology/canu: Single molecule sequence assembler
Approved by: jrm (mentor) or wen (mentor)
Differential Revision: https://reviews.freebsd.org/D13574
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Number of commits found: 29 |