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non port: biology/cd-hit/Makefile
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Number of commits found: 13

Thu, 14 Mar 2019
[ 23:59 jwb ] Original commit   Revision:495746
495746 biology/cd-hit/Makefile
495746 biology/cd-hit/distinfo
495746 biology/cd-hit/files
495746 biology/cd-hit/files/patch-Makefile
495746 biology/cd-hit/pkg-plist
biology/cd-hit: Upgrade to 4.8.1

Convert Makefile REINPLACE to patch for sending upstream
Wed, 12 Dec 2018
[ 01:35 gerald ] Original commit   Revision:487272
487272 Mk/bsd.ruby.mk
487272 accessibility/atkmm/Makefile
487272 accessibility/kmag/Makefile
487272 accessibility/kmousetool/Makefile
487272 accessibility/kmouth/Makefile
487272 accessibility/qt5-speech/Makefile
487272 archivers/R-cran-zip/Makefile
487272 archivers/ark/Makefile
487272 archivers/brotli/Makefile
487272 archivers/c-blosc/Makefile

(Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Sun, 29 Jul 2018
[ 22:18 gerald ] Original commit   Revision:475857
475857 Mk/bsd.ruby.mk
475857 accessibility/atkmm/Makefile
475857 archivers/brotli/Makefile
475857 archivers/c-blosc/Makefile
475857 archivers/innoextract/Makefile
475857 archivers/kf5-karchive/Makefile
475857 archivers/lazperf/Makefile
475857 archivers/libpar2/Makefile
475857 archivers/paq/Makefile
475857 archivers/pxz/Makefile

(Only the first 10 of 1480 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
Sat, 10 Mar 2018
[ 17:46 gerald ] Original commit   Revision:464084
464084 archivers/pxz/Makefile
464084 archivers/zip-ada/Makefile
464084 astro/R-cran-maptools/Makefile
464084 astro/astrometry/Makefile
464084 astro/kstars-kde4/Makefile
464084 astro/nightfall/Makefile
464084 astro/py-RO/Makefile
464084 astro/py-aipy/Makefile
464084 astro/py-astLib/Makefile
464084 astro/py-astropy/Makefile

(Only the first 10 of 1104 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Wed, 31 Jan 2018
[ 01:07 jwb ] Original commit   Revision:460452
460452 audio/praat/Makefile
460452 biology/bowtie/Makefile
460452 biology/bwa/Makefile
460452 biology/cd-hit/Makefile
460452 biology/cdbfasta/Makefile
460452 biology/fastool/Makefile
460452 biology/fastx-toolkit/Makefile
460452 biology/gmap/Makefile
460452 biology/jellyfish/Makefile
460452 biology/libgtextutils/Makefile

(Only the first 10 of 56 ports in this commit are shown above. View all ports for this commit)
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
Sun, 10 Sep 2017
[ 20:55 gerald ] Original commit   Revision:449591
449591 accessibility/atkmm/Makefile
449591 archivers/brotli/Makefile
449591 archivers/c-blosc/Makefile
449591 archivers/kf5-karchive/Makefile
449591 archivers/libpar2/Makefile
449591 archivers/paq/Makefile
449591 archivers/pxz/Makefile
449591 archivers/py-brotli/Makefile
449591 archivers/rvm/Makefile
449591 astro/geographiclib/Makefile

(Only the first 10 of 1201 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
Sat, 1 Apr 2017
[ 15:23 gerald ] Original commit   Revision:437439
437439 archivers/kf5-karchive/Makefile
437439 archivers/paq/Makefile
437439 archivers/pxz/Makefile
437439 archivers/py-brotli/Makefile
437439 archivers/rvm/Makefile
437439 astro/geographiclib/Makefile
437439 astro/gpstk/Makefile
437439 astro/kstars/Makefile
437439 astro/libosmium/Makefile
437439 astro/nightfall/Makefile

(Only the first 10 of 1118 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
Tue, 20 Dec 2016
[ 16:48 jrm ] Original commit   Revision:429002
429002 biology/cd-hit/Makefile
429002 biology/cd-hit/distinfo
biology/cd-hit: Update to bug-fix release 4.6.6

Changes in version 4.6.6:
Bug fix for cd-hit-dup in variable length input when write out R1 reads

Changes in version 4.6.5:
Add filter for -aL option so that short sequences will be skipped if not
satisfy representative sequences' -aL requirement. This will make compute
faster in clustering settings where sequences in the same cluster are
required to have similar length using -aL -AL option (e.g. -aL 0.9).

Approved by:	AMDmi3 (mentor) swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8186
Fri, 2 Dec 2016
[ 11:58 mat ] Original commit   Revision:427552
427552 archivers/p5-Compress-LZ4/Makefile
427552 astro/p5-Starlink-AST/Makefile
427552 audio/libogg/Makefile
427552 audio/libvorbis/Makefile
427552 audio/p5-Net-FreeDB/Makefile
427552 biology/cd-hit/Makefile
427552 cad/tkgate/Makefile
427552 comms/qsstv/Makefile
427552 comms/svxlink/Makefile
427552 comms/trustedqsl/Makefile

(Only the first 10 of 119 ports in this commit are shown above. View all ports for this commit)
Do not use post-stage.  Use post-install instead.

The only reason to use post-stage is because the port needs to do
"things" at a later time, like some plist manipulation.
While there, fold post-install in do-install targets when they are
defined.

PR:		214780
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Sun, 20 Nov 2016
[ 09:38 gerald ] Original commit   Revision:426566
426566 archivers/paq/Makefile
426566 archivers/pxz/Makefile
426566 astro/gpstk/Makefile
426566 audio/codec2/Makefile
426566 audio/csound/Makefile
426566 audio/deadbeef/Makefile
426566 audio/firefly/Makefile
426566 audio/funktrackergold/Makefile
426566 audio/idjc/Makefile
426566 audio/libsoxr/Makefile

(Only the first 10 of 364 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
Fri, 11 Dec 2015
[ 08:48 miwi ] Original commit   Revision:403506
403506 audio/praat/Makefile
403506 biology/bwa/Makefile
403506 biology/cd-hit/Makefile
403506 biology/cdbfasta/Makefile
403506 biology/fastool/Makefile
403506 biology/fasttree/Makefile
403506 biology/fastx-toolkit/Makefile
403506 biology/gmap/Makefile
403506 biology/hmmer/Makefile
403506 biology/libgtextutils/Makefile

(Only the first 10 of 54 ports in this commit are shown above. View all ports for this commit)
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
Sat, 19 Sep 2015
[ 13:12 wen ] Original commit   Revision:397322
397322 biology/cd-hit/Makefile
- Use compiler:openmp instead of gcc
- Minor cleanup

Reported by:	danfe@
[ 11:16 wen ] Original commit   Revision:397318
397318 biology/Makefile
397318 biology/cd-hit
397318 biology/cd-hit/Makefile
397318 biology/cd-hit/distinfo
397318 biology/cd-hit/pkg-descr
397318 biology/cd-hit/pkg-plist
CD-HIT is a very widely used program for clustering and comparing protein or
nucleotide sequences.

WWW: http://weizhong-lab.ucsd.edu/cd-hit/

PR:		203183
Submitted by:	jwbacon@tds.net

Number of commits found: 13

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