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Things are slow!

Some of the pages ont the website are slow. I know diskio is way up. I don't know what it is but it's been going on for about three weeks. It might have been a change to the zpool recordsize on the PostgreSQL database dataset.

One way to know: copy the dataset to another dataset with the original recordsize and use that. I hope can get to that later this week.

I have not tackled the issue yet because I've been concentrating on the BSDCan and PGCon calls for papers.

Port details
checkm Quality assessment tool for the microbial genomes
1.0.18 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port 1.0.13Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-12-07 00:26:14
Last Update: 2019-08-19 09:25:29
SVN Revision: 509260
Also Listed In: python
License: GPLv3
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
  1. /usr/local/share/licenses/CheckM-1.0.18/catalog.mk
  2. /usr/local/share/licenses/CheckM-1.0.18/LICENSE
  3. /usr/local/share/licenses/CheckM-1.0.18/GPLv3
Collapse this list.
Dependency lines:
  • CheckM>0:biology/checkm
To install the port: cd /usr/ports/biology/checkm/ && make install clean
To add the package: pkg install CheckM
PKGNAME: CheckM
Flavors: there is no flavor information for this port.
distinfo:

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py36-setuptools>0 : devel/py-setuptools@py36
  2. python3.6 : lang/python36
Runtime dependencies:
  1. py36-numpy>0 : math/py-numpy@py36
  2. py36-DendroPy>=4.0.0 : science/py-DendroPy@py36
  3. py36-matplotlib>=1.3.1 : math/py-matplotlib@py36
  4. py36-pysam>=0.8.3 : biology/py-pysam@py36
  5. py36-scipy>=0.9.0 : science/py-scipy@py36
  6. py36-setuptools>0 : devel/py-setuptools@py36
  7. python3.6 : lang/python36
There are no ports dependent upon this port

Configuration Options

USES:

Master Sites:
  1. https://codeload.github.com/Ecogenomics/CheckM/tar.gz/v1.0.18?dummy=/

Number of commits found: 8

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
19 Aug 2019 08:25:29
Original commit files touched by this commit  1.0.18
Revision:509260
yuri search for other commits by this committer
biology/checkm: Update 1.0.17 -> 1.0.18

Reported by:	portscout
11 Aug 2019 19:16:49
Original commit files touched by this commit  1.0.17
Revision:508667
yuri search for other commits by this committer
biology/checkm: Update 1.0.16 -> 1.0.17

Reported by:	portscout
09 Aug 2019 07:22:48
Original commit files touched by this commit  1.0.16
Revision:508421
yuri search for other commits by this committer
biology/checkm: Update 1.0.13 -> 1.0.16

Reported by:	portscout
26 Jul 2019 20:46:57
Original commit files touched by this commit  1.0.13_2
Revision:507372
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
10 Apr 2019 06:18:32
Original commit files touched by this commit  1.0.13_1
Revision:498530
antoine search for other commits by this committer
Bump a few PORTREVISIONs after r498529

With hat:	portmgr
09 Feb 2019 22:58:10
Original commit files touched by this commit  1.0.13
Revision:492531
yuri search for other commits by this committer
biology/checkm: Update 1.0.12 -> 1.0.13

Reported by:	portscout
12 Dec 2018 01:35:36
Original commit files touched by this commit  1.0.12_1
Revision:487272
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
07 Dec 2018 00:26:04
Original commit files touched by this commit  1.0.12
Revision:486814
yuri search for other commits by this committer
New port: math/checkm: Quality assessment tool for the microbial genomes

Number of commits found: 8

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