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Port details
checkm Quality assessment tool for the microbial genomes
1.0.18 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.0.18Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-12-07 00:26:14
Last Update: 2021-05-10 20:13:20
Commit Hash: 1d44af5
Also Listed In: python
License: GPLv3
Description:
SVNWeb : git : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/CheckM-1.0.18/catalog.mk
  2. /usr/local/share/licenses/CheckM-1.0.18/LICENSE
  3. /usr/local/share/licenses/CheckM-1.0.18/GPLv3
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Dependency lines:
  • CheckM>0:biology/checkm
To install the port: cd /usr/ports/biology/checkm/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/checkm
  • pkg install CheckM
PKGNAME: CheckM
Flavors: there is no flavor information for this port.
distinfo:
Packages (timestamps in pop-ups are UTC):
CheckM
ABIlatestquarterly
FreeBSD:11:aarch64-1.0.18
FreeBSD:11:amd641.0.181.0.18
FreeBSD:11:armv6--
FreeBSD:11:i3861.0.181.0.18
FreeBSD:11:mips--
FreeBSD:11:mips64--
FreeBSD:12:aarch64-1.0.18
FreeBSD:12:amd641.0.181.0.18
FreeBSD:12:armv6--
FreeBSD:12:armv7--
FreeBSD:12:i3861.0.181.0.18
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-1.0.18
FreeBSD:13:aarch641.0.181.0.18
FreeBSD:13:amd641.0.181.0.18
FreeBSD:13:armv6--
FreeBSD:13:armv7--
FreeBSD:13:i3861.0.181.0.18
FreeBSD:13:mips--
FreeBSD:13:mips64--
FreeBSD:13:powerpc64--
FreeBSD:14:aarch641.0.18-
FreeBSD:14:amd641.0.18-
FreeBSD:14:armv6--
FreeBSD:14:armv7--
FreeBSD:14:i3861.0.18-
FreeBSD:14:mips--
FreeBSD:14:mips64--
FreeBSD:14:powerpc641.0.18-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. py38-setuptools>0 : devel/py-setuptools@py38
  2. python3.8 : lang/python38
Runtime dependencies:
  1. py38-numpy>=1.16,1<1.20,1 : math/py-numpy@py38
  2. py38-DendroPy>=4.0.0 : science/py-DendroPy@py38
  3. py38-matplotlib>=1.3.1 : math/py-matplotlib@py38
  4. py38-pysam>=0.8.3 : biology/py-pysam@py38
  5. py38-scipy>=0.9.0 : science/py-scipy@py38
  6. py38-setuptools>0 : devel/py-setuptools@py38
  7. python3.8 : lang/python38
There are no ports dependent upon this port

Configuration Options:
Options name:

USES:

FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/Ecogenomics/CheckM/tar.gz/v1.0.18?dummy=/
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Number of commits found: 12

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
10 May 2021 20:13:20
 files touched by this commit commit hash:1d44af58980136b882d146f21d8776943a14c5eb  1.0.18
thierry search for other commits by this committer
math/py-matplotlib: chase minimum Python version in dependent ports

Since the previous update changed USES=python from 3.6+ to 3.7+, all
dependent ports must have USES=python:3.7+ as well, otherwise it breaks
the @py36 flavor.

PR:		255347
Reported by:	sunpoet
07 Apr 2021 08:09:01
 files touched by this commit commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  1.0.18
mat search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
06 Apr 2021 14:31:07
 files touched by this commit commit hash:305f148f482daf30dcf728039d03d019f88344eb  1.0.18
mat search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
24 Dec 2020 09:03:39
Original commit files touched by this commit Revision:559053  1.0.18
antoine search for other commits by this committer
scipy 1.5.4 is only compatible with python 3.6+

Reported by:	pkg-fallout
19 Aug 2019 08:25:29
Original commit files touched by this commit Revision:509260  1.0.18
yuri search for other commits by this committer
biology/checkm: Update 1.0.17 -> 1.0.18

Reported by:	portscout
11 Aug 2019 19:16:49
Original commit files touched by this commit Revision:508667  1.0.17
yuri search for other commits by this committer
biology/checkm: Update 1.0.16 -> 1.0.17

Reported by:	portscout
09 Aug 2019 07:22:48
Original commit files touched by this commit Revision:508421  1.0.16
yuri search for other commits by this committer
biology/checkm: Update 1.0.13 -> 1.0.16

Reported by:	portscout
26 Jul 2019 20:46:57
Original commit files touched by this commit Revision:507372  1.0.13_2
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
10 Apr 2019 06:18:32
Original commit files touched by this commit Revision:498530  1.0.13_1
antoine search for other commits by this committer
Bump a few PORTREVISIONs after r498529

With hat:	portmgr
09 Feb 2019 22:58:10
Original commit files touched by this commit Revision:492531  1.0.13
yuri search for other commits by this committer
biology/checkm: Update 1.0.12 -> 1.0.13

Reported by:	portscout
12 Dec 2018 01:35:36
Original commit files touched by this commit Revision:487272  1.0.12_1
gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
07 Dec 2018 00:26:04
Original commit files touched by this commit Revision:486814  1.0.12
yuri search for other commits by this committer
New port: math/checkm: Quality assessment tool for the microbial genomes

Number of commits found: 12