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non port: biology/checkm/Makefile

Number of commits found: 21

Tuesday, 27 Jun 2023
19:34 Rene Ladan (rene) search for other commits by this committer
all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>
commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb commit hash: 3d9a815d9c5acbb71f4bb07738bdeab4879feacb 3d9a815
Sunday, 23 Apr 2023
09:09 Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b 8d3e020
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Sunday, 1 May 2022
18:14 Yuri Victorovich (yuri) search for other commits by this committer
biology/checkm: Update 1.1.11 -> 1.2.0

Reported by:	portscout
commit hash: dda16bd48503ae87f3a8d7840b893a04aecc87d7 commit hash: dda16bd48503ae87f3a8d7840b893a04aecc87d7 commit hash: dda16bd48503ae87f3a8d7840b893a04aecc87d7 commit hash: dda16bd48503ae87f3a8d7840b893a04aecc87d7 dda16bd
Monday, 25 Apr 2022
20:50 Yuri Victorovich (yuri) search for other commits by this committer
biology/checkm: Update 1.1.10 -> 1.1.11

Reported by:	portscout
commit hash: 088dbf75b83582549a0131b2b83ab5eea3039232 commit hash: 088dbf75b83582549a0131b2b83ab5eea3039232 commit hash: 088dbf75b83582549a0131b2b83ab5eea3039232 commit hash: 088dbf75b83582549a0131b2b83ab5eea3039232 088dbf7
Friday, 22 Apr 2022
18:04 Yuri Victorovich (yuri) search for other commits by this committer
biology/checkm: Update 1.1.9 -> 1.1.10

Reported by:	portscout
commit hash: d0a1dad5c44f9a34aab26c3e70a8c82e5ccfde71 commit hash: d0a1dad5c44f9a34aab26c3e70a8c82e5ccfde71 commit hash: d0a1dad5c44f9a34aab26c3e70a8c82e5ccfde71 commit hash: d0a1dad5c44f9a34aab26c3e70a8c82e5ccfde71 d0a1dad
Friday, 15 Apr 2022
19:09 Yuri Victorovich (yuri) search for other commits by this committer
biology/checkm: Update 1.1.8 -> 1.1.9

Reported by:	portscout
commit hash: f7875ce1de3c8e5e62fbc812436c87b7e92eee08 commit hash: f7875ce1de3c8e5e62fbc812436c87b7e92eee08 commit hash: f7875ce1de3c8e5e62fbc812436c87b7e92eee08 commit hash: f7875ce1de3c8e5e62fbc812436c87b7e92eee08 f7875ce
Tuesday, 12 Apr 2022
03:22 Yuri Victorovich (yuri) search for other commits by this committer
biology/checkm: Update 1.0.18 -> 1.1.8

Reported by:	portscout
commit hash: 350d96226d1bcf56747c37a3ba7e33564fc42f69 commit hash: 350d96226d1bcf56747c37a3ba7e33564fc42f69 commit hash: 350d96226d1bcf56747c37a3ba7e33564fc42f69 commit hash: 350d96226d1bcf56747c37a3ba7e33564fc42f69 350d962
Friday, 25 Mar 2022
13:38 Po-Chuan Hsieh (sunpoet) search for other commits by this committer
biology/checkm: Fix build with setuptools 58.0.0+

With hat:	python
commit hash: c750cbac580143e48a23ed5af71ac671614b8015 commit hash: c750cbac580143e48a23ed5af71ac671614b8015 commit hash: c750cbac580143e48a23ed5af71ac671614b8015 commit hash: c750cbac580143e48a23ed5af71ac671614b8015 c750cba
Monday, 10 May 2021
20:13 Thierry Thomas (thierry) search for other commits by this committer
math/py-matplotlib: chase minimum Python version in dependent ports

Since the previous update changed USES=python from 3.6+ to 3.7+, all
dependent ports must have USES=python:3.7+ as well, otherwise it breaks
the @py36 flavor.

PR:		255347
Reported by:	sunpoet
commit hash: 1d44af58980136b882d146f21d8776943a14c5eb commit hash: 1d44af58980136b882d146f21d8776943a14c5eb commit hash: 1d44af58980136b882d146f21d8776943a14c5eb commit hash: 1d44af58980136b882d146f21d8776943a14c5eb 1d44af5
Wednesday, 7 Apr 2021
08:09 Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c cf118cc
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Thursday, 24 Dec 2020
09:03 antoine search for other commits by this committer
scipy 1.5.4 is only compatible with python 3.6+

Reported by:	pkg-fallout
Original commitRevision:559053 
Monday, 19 Aug 2019
08:25 yuri search for other commits by this committer
biology/checkm: Update 1.0.17 -> 1.0.18

Reported by:	portscout
Original commitRevision:509260 
Sunday, 11 Aug 2019
19:16 yuri search for other commits by this committer
biology/checkm: Update 1.0.16 -> 1.0.17

Reported by:	portscout
Original commitRevision:508667 
Friday, 9 Aug 2019
07:22 yuri search for other commits by this committer
biology/checkm: Update 1.0.13 -> 1.0.16

Reported by:	portscout
Original commitRevision:508421 
Friday, 26 Jul 2019
20:46 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Original commitRevision:507372 
Wednesday, 10 Apr 2019
06:18 antoine search for other commits by this committer
Bump a few PORTREVISIONs after r498529

With hat:	portmgr
Original commitRevision:498530 
Saturday, 9 Feb 2019
22:58 yuri search for other commits by this committer
biology/checkm: Update 1.0.12 -> 1.0.13

Reported by:	portscout
Original commitRevision:492531 
Wednesday, 12 Dec 2018
01:35 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Original commitRevision:487272 
Friday, 7 Dec 2018
00:26 yuri search for other commits by this committer
New port: math/checkm: Quality assessment tool for the microbial genomes
Original commitRevision:486814 

Number of commits found: 21