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Current status

The server has been repaired, with a new power supply, for $23. I am waiting for lower COVID rates before visiting the datacenter to return it.
non port: biology/consed/Makefile
SVNWeb

Number of commits found: 20

Sat, 4 Apr 2020
[ 20:51 antoine ] Original commit   Revision:530719(Only the first 10 of 520 ports in this commit are shown above. View all ports for this commit)
Deprecate ports broken for more than 6 months
Wed, 6 Nov 2019
[ 12:48 antoine ] Original commit   Revision:516880(Only the first 10 of 268 ports in this commit are shown above. View all ports for this commit)
Mark a few ports BROKEN, unfetchable
Mon, 5 Sep 2016
[ 19:23 tijl ] Original commit   Revision:421387(Only the first 10 of 303 ports in this commit are shown above. View all ports for this commit)
- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with
  Mk/Uses/linux.mk.
- Replace USE_LINUX=yes with USES+=linux and USE_LINUX=(.*) with
  USES+=linux:\1 in all ports.
- Replace USE_LINUX_APPS with USE_LINUX in all ports.
- Use INSTALL_SCRIPT instead of INSTALL_PROGRAM to install scripts in some
  ports.
- When USE_LINUX_RPM is defined, simplify the way DISTFILES and EXTRACT_ONLY
  are defined.
- Remove BRANDELF_DIRS and BRANDELF_FILES handling.  In the very rare cases
  that it is still necessary ports can run ${BRANDELF} from post-patch.
- Remove AUTOMATIC_PLIST handling.  Only one port used it.
- Fix Linux MASTER_SITES.
- Replace OVERRIDE_LINUX_BASE_PORT and OVERRIDE_LINUX_NONBASE_PORTS with
  default versions framework.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 1 Apr 2016
[ 13:29 mat ] Original commit   Revision:412344(Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Sat, 26 Dec 2015
[ 13:26 rene ] Original commit   Revision:404510
biology/consed: undeprecate, it presumably builds fine but it is restricted.

Add a note to ports/LEGAL
Sun, 25 Oct 2015
[ 19:35 antoine ] Original commit   Revision:400160(Only the first 10 of 95 ports in this commit are shown above. View all ports for this commit)
Deprecate ports broken for more than 6 months
Mon, 13 Apr 2015
[ 14:49 mat ] Original commit   Revision:383926
${ENV} does not exist, it is called ${SETENV}.
Sun, 5 Apr 2015
[ 17:55 bapt ] Original commit   Revision:383309
Mark as broken unfetchable ports
Sat, 23 Aug 2014
[ 18:04 pi ] Original commit   Revision:365765(Only the first 10 of 31 ports in this commit are shown above. View all ports for this commit)
update ports:
	biology/phrab
	biology/phred
	biology/consed

Although these programs are licensed freely for academic and nonprofit
purposes, users have to contact the authors to obtain the tarballs.

PR:		191336
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
Tue, 29 Jul 2014
[ 19:11 adamw ] Original commit   Revision:363374(Only the first 10 of 436 ports in this commit are shown above. View all ports for this commit)
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)
Mon, 9 Jun 2014
[ 11:21 olgeni ] Original commit   Revision:357139(Only the first 10 of 120 ports in this commit are shown above. View all ports for this commit)
Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. Categories A-C.

CR:		D196
Approved by:	portmgr (bapt)
Sat, 10 May 2014
[ 18:07 antoine ] Original commit   Revision:353593
Replace maintainer's email address with one that seems to work

With hat:	portmgr
Fri, 21 Feb 2014
[ 13:35 ehaupt ] Original commit   Revision:345397
Remove trailing whitespaces from category biology
Mon, 10 Feb 2014
[ 13:54 ehaupt ] Original commit   Revision:343634(Only the first 10 of 581 ports in this commit are shown above. View all ports for this commit)
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
Fri, 3 Jan 2014
[ 15:46 adamw ] Original commit   Revision:338550(Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
Convert biology to MDOCS and MEXAMPLES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Sat, 7 Sep 2013
[ 07:44 az ] Original commit   Revision:326575(Only the first 10 of 19 ports in this commit are shown above. View all ports for this commit)
- convert to the new perl5 framework

Approved by:	portmgr (bapt@, blanket)
Thu, 19 Mar 2009
[ 17:28 bsam ] Original commit (Only the first 10 of 136 ports in this commit are shown above. View all ports for this commit)
Welcome to the new linux ports infrastructure which allows using
both current (fc4) and future linux (f8) distributions at one
ports tree.

The patch contains full changes to ports/Mk files and all ports involved.
But only infrastructure is changed. The resulting packages are the same as
before. Hence no need to bump PORTREVISIONs.

The idea was taken from bsd.gnome.mk and others.

More than 130 ports are switched to follow a new linux infrastructure
introduced by changes to bsd.port.mk, bsd.linux-rpm.mk and a new
bsd.linux-apps.mk.

Thanks for all who was involved and helped me with this work.
And help from Alexander Leidinger was incredible.

Other changes are coming. Stay tuned!

PR:             ports/132510
Submitted by:   bsam (me)
Exp-run by:     portmgr (pav)
Sun, 25 May 2008
[ 23:05 edwin ] Original commit 
Teach the building cluster that these ports are not to be build
Sat, 24 May 2008
[ 07:00 edwin ] Original commit 
New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 20