FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

We also have a status page: https://freshports.wordpress.com/

non port: biology/consed/files/patch-misc_mktrace.c
SVNWeb

Number of commits found: 1

Sat, 24 May 2008
[ 07:00 edwin ] Original commit 
1.98 biology/Makefile
1.1 biology/consed/Makefile
1.1 biology/consed/distinfo
1.1 biology/consed/files/patch-misc_mktrace.c
1.1 biology/consed/files/patch-scripts_addReads2Consed.perl
1.1 biology/consed/files/patch-scripts_determineReadTypes.perl
1.1 biology/consed/files/patch-scripts_phredPhrap
1.1 biology/consed/pkg-descr
1.1 biology/consed/pkg-plist.examples
New port: biology/consed viewing and editing workbench for sequence
assembly

        Consed is a tool for viewing, editing, and finishing sequence
assemblies.

        The port is constituted of 4 parts:
        biology/phred: base caller with quality evaluation
        biology/phrap: sequence assembler for shotgun sequencing
        biology/consed: workbench
        biology/phd2fasta: small utility

        All these can be used separately; however, most function
        of consed depends on the others.

        Although these programs are licensed freely for academic
        and nonprofit purposes, users have to contact the authors
        to get the softwares.
        Phred (including phd2fasta) and phrap are emailed,
        and consed can be downloaded to a restricted IP address.
        For commercial users, the licensing fee is ca. $10,000 at
        the time of writing.

PR:             ports/118548
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 1

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
jenkinsDec 15
jenkins-ltsDec 15
gitlabDec 14
nodeDec 14
node4Dec 14
node6Dec 14
node8Dec 14
torDec 14
asterisk13Dec 13
asterisk13*Dec 13
asterisk13*Dec 13
asterisk13*Dec 13
libxml2Dec 13
curl*Dec 11
linux-c7-curl*Dec 11

17 vulnerabilities affecting 108 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2017-12-15 16:33:45


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 32130
Broken 122
Deprecated 46
Ignore 358
Forbidden 0
Restricted 173
No CDROM 77
Vulnerable 44
Expired 10
Set to expire 38
Interactive 0
new 24 hours 1
new 48 hours7
new 7 days77
new fortnight120
new month48551

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2017 Dan Langille. All rights reserved.