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non port: biology/crux/Makefile
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Number of commits found: 29

Fri, 13 Oct 2017
[ 11:14 bapt ] Original commit   Revision:451982
451982 biology/ariadne/Makefile
451982 biology/biococoa/Makefile
451982 biology/crux/Makefile
451982 biology/plink/Makefile
451982 biology/ssaha/Makefile
451982 biology/tRNAscan-SE/Makefile
Mark as broken ports with no public distfiles
Sun, 10 Sep 2017
[ 20:55 gerald ] Original commit   Revision:449591
449591 accessibility/atkmm/Makefile
449591 archivers/brotli/Makefile
449591 archivers/c-blosc/Makefile
449591 archivers/kf5-karchive/Makefile
449591 archivers/libpar2/Makefile
449591 archivers/paq/Makefile
449591 archivers/pxz/Makefile
449591 archivers/py-brotli/Makefile
449591 archivers/rvm/Makefile
449591 astro/geographiclib/Makefile

(Only the first 10 of 1201 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
Fri, 26 May 2017
[ 20:02 linimon ] Original commit   Revision:441814
441814 archivers/snappy-java/Makefile
441814 astro/boinc-astropulse/Makefile
441814 audio/funktrackergold/Makefile
441814 audio/gervill/Makefile
441814 biology/bwa/Makefile
441814 biology/crux/Makefile
441814 comms/rxtx/Makefile
441814 databases/xapian-core10/Makefile
441814 devel/bazel/Makefile
441814 devel/charva/Makefile

(Only the first 10 of 32 ports in this commit are shown above. View all ports for this commit)
Mark some ports failing on armv6, for errors classified as "???".

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Mon, 1 May 2017
[ 19:24 linimon ] Original commit   Revision:439905
439905 audio/gnomoradio/Makefile
439905 audio/musicpd/Makefile
439905 audio/umurmur/Makefile
439905 biology/crux/Makefile
439905 biology/seqan-apps/Makefile
439905 cad/alliance/Makefile
439905 editors/texstudio/Makefile
439905 emulators/catapult/Makefile
439905 emulators/dtcyber/Makefile
439905 emulators/pearpc/Makefile

(Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
Provide error messages for some ports failing on aarch64, and, in a
few cases, other tier-2 archs.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Sat, 1 Apr 2017
[ 15:23 gerald ] Original commit   Revision:437439
437439 archivers/kf5-karchive/Makefile
437439 archivers/paq/Makefile
437439 archivers/pxz/Makefile
437439 archivers/py-brotli/Makefile
437439 archivers/rvm/Makefile
437439 astro/geographiclib/Makefile
437439 astro/gpstk/Makefile
437439 astro/kstars/Makefile
437439 astro/libosmium/Makefile
437439 astro/nightfall/Makefile

(Only the first 10 of 1118 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
Wed, 7 Dec 2016
[ 13:24 gerald ] Original commit   Revision:428057
428057 astro/nightfall/Makefile
428057 astro/wcslib/Makefile
428057 benchmarks/himenobench/Makefile
428057 benchmarks/hpl/Makefile
428057 benchmarks/octave-forge-benchmark/Makefile
428057 biology/crux/Makefile
428057 biology/molden/Makefile
428057 biology/mopac/Makefile
428057 biology/plink/Makefile
428057 biology/psi88/Makefile

(Only the first 10 of 227 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry
Fri, 1 Apr 2016
[ 13:29 mat ] Original commit   Revision:412344
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile

(Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Wed, 30 Dec 2015
[ 19:49 marino ] Original commit   Revision:404876
404876 biology/crux/Makefile
biology/crux is not jobs safe

This cython-based port has failed on me a couple of times in a bulk build.
I'm not sure what the actual problem is but the issue is itermittent.
Wed, 2 Sep 2015
[ 09:23 danfe ] Original commit   Revision:395826
395826 biology/crux/Makefile
395826 biology/crux/files/patch-lib_Crux_CxPpc.c
Unbreak the build on PowerPC, it had nothing to do with "error in pthreads":
configure script was passing `-faltivec' to the compiler, while this flag is
non-standard and only supported on Mac OS X/Darwin systems.

Also replace Apple-specific Altivec detection with querying the "hw.altivec"
sysctl instead.
[ 03:04 amdmi3 ] Original commit   Revision:395817
395817 biology/crux/Makefile
- Switch to options helpers
Wed, 10 Sep 2014
[ 20:50 gerald ] Original commit   Revision:367888
367888 accessibility/accerciser/Makefile
367888 accessibility/jovie/Makefile
367888 accessibility/kaccessible/Makefile
367888 accessibility/kdeaccessibility4/Makefile
367888 accessibility/kmag/Makefile
367888 accessibility/kmousetool/Makefile
367888 accessibility/kmouth/Makefile
367888 accessibility/orca/Makefile
367888 arabic/kde4-l10n/Makefile
367888 arabic/libreoffice/Makefile

(Only the first 10 of 3171 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Tue, 26 Aug 2014
[ 20:39 rene ] Original commit   Revision:366266
366266 biology/crux/Makefile
366266 biology/crux/files
366266 biology/crux/files/pkg-install
366266 biology/crux/pkg-descr
366266 biology/crux/pkg-plist
biology/crux: stage, modernize, add license (BSD[23]CLAUSE), cleanups

PR:		193026
Submitted by:	Ports Fury
Tue, 29 Jul 2014
[ 18:41 adamw ] Original commit   Revision:363371
363371 archivers/file-roller/Makefile
363371 audio/amarok-kde4/Makefile
363371 audio/freedesktop-sound-theme/Makefile
363371 audio/ipod-sharp/Makefile
363371 audio/lastfm-desktop/Makefile
363371 audio/liquidsoap/Makefile
363371 biology/crux/Makefile
363371 biology/pymol/Makefile
363371 comms/gammu-devel/Makefile
363371 comms/gtkmmorse/Makefile

(Only the first 10 of 426 ports in this commit are shown above. View all ports for this commit)
Convert a bunch of USE_BZIP2 to USES=tar:bzip2

Approved by:	portmgr (not really, but touches unstaged ports)
Wed, 23 Jul 2014
[ 16:44 bapt ] Original commit   Revision:362705
362705 benchmarks/himenobench/Makefile
362705 benchmarks/spec-sfs/Makefile
362705 biology/crux/Makefile
362705 biology/embassy/Makefile
362705 biology/p5-bioperl-run/Makefile
362705 biology/phd2fasta/Makefile
362705 biology/protomol/Makefile
362705 biology/pymol/Makefile
362705 cad/alliance/Makefile
362705 cad/cider/Makefile

(Only the first 10 of 55 ports in this commit are shown above. View all ports for this commit)
Reset maintainership for ports not staged with no pending PR

With hat:	portmgr
Mon, 10 Mar 2014
[ 20:55 gerald ] Original commit   Revision:347809
347809 archivers/hs-tar/Makefile
347809 archivers/hs-zip-archive/Makefile
347809 archivers/hs-zlib-bindings/Makefile
347809 archivers/hs-zlib-conduit/Makefile
347809 archivers/hs-zlib-enum/Makefile
347809 archivers/hs-zlib/Makefile
347809 astro/R-cran-maptools/Makefile
347809 astro/astrometry/Makefile
347809 astro/nightfall/Makefile
347809 astro/py-RO/Makefile

(Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Sun, 16 Feb 2014
[ 17:15 tijl ] Original commit   Revision:344614
344614 Mk/Uses/cran.mk
344614 Mk/Uses/fortran.mk
344614 Mk/bsd.gcc.mk
344614 Mk/bsd.octave.mk
344614 Mk/bsd.port.mk
344614 benchmarks/himenobench/Makefile
344614 benchmarks/hpl/Makefile
344614 benchmarks/octave-forge-benchmark/Makefile
344614 biology/crux/Makefile
344614 biology/plink/Makefile

(Only the first 10 of 211 ports in this commit are shown above. View all ports for this commit)
Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases
USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)
Mon, 13 Jan 2014
[ 21:00 rene ] Original commit   Revision:339634
339634 accessibility/accerciser/Makefile
339634 accessibility/at-spi/Makefile
339634 accessibility/orca/Makefile
339634 accessibility/py-atspi/Makefile
339634 accessibility/py-papi/Makefile
339634 archivers/rpm4/Makefile
339634 astro/astrometry/Makefile
339634 astro/py-metar/Makefile
339634 astro/pyephem/Makefile
339634 audio/alsa-lib/Makefile

(Only the first 10 of 702 ports in this commit are shown above. View all ports for this commit)
Python cleanup:
- USE_PYTHON* = 2.X -> USE_PYTHON* = 2
- USE_PYTHON* = 2.X+ -> USE_PYTHON* = yes
Reviewed by:	python (mva, rm)
Approved by:	portmgr-lurkers (mat)
Wed, 11 Dec 2013
[ 14:43 bapt ] Original commit   Revision:336171
336171 biology/crux/Makefile
336171 biology/embassy/Makefile
336171 biology/emboss/Makefile
336171 biology/iolib/Makefile
336171 biology/libsbml/Makefile
336171 biology/mopac/Makefile
336171 biology/ortep3/Makefile
336171 biology/plink/Makefile
336171 biology/plinkseq/Makefile
336171 biology/protomol/Makefile

(Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
Sat, 26 Oct 2013
[ 00:52 gerald ] Original commit   Revision:331644
331644 archivers/hs-tar/Makefile
331644 archivers/hs-zip-archive/Makefile
331644 archivers/hs-zlib-bindings/Makefile
331644 archivers/hs-zlib-conduit/Makefile
331644 archivers/hs-zlib-enum/Makefile
331644 archivers/hs-zlib/Makefile
331644 astro/R-cran-maptools/Makefile
331644 astro/astrometry/Makefile
331644 astro/nightfall/Makefile
331644 astro/py-RO/Makefile

(Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Mon, 18 Mar 2013
[ 06:48 jgh ] Original commit   Revision:314529
314529 biology/crux/Makefile
- adoption of optionsNG
- trim historical header
- use tabs in favor of spaces

Approved by:	portmgr (miwi)
Thu, 10 Nov 2011
[ 14:30 linimon ] Original commit 
1.8 biology/crux/Makefile
Does not build on powerpc-9: error in pthreads.

Hat:            portmgr
Feature safe:   yes
Fri, 23 Sep 2011
[ 22:26 amdmi3 ] Original commit 
1.11 Mk/bsd.cmake.mk
1.65 Mk/bsd.database.mk
1.5 Mk/bsd.efl.mk
1.66 Mk/bsd.gnustep.mk
1.82 Mk/bsd.kde.mk
1.2 Mk/bsd.ncurses.mk
1.46 Mk/bsd.openssl.mk
1.696 Mk/bsd.port.mk
1.28 Mk/bsd.qt.mk
1.17 accessibility/accerciser/Makefile

(Only the first 10 of 2369 ports in this commit are shown above. View all ports for this commit)
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav
Sat, 19 Sep 2009
[ 17:58 jasone ] Original commit 
1.6 biology/crux/Makefile
1.3 biology/crux/distinfo
1.4 biology/crux/pkg-plist
Update to Crux 1.2.0.

Feature safe:   yes
Sun, 13 Sep 2009
[ 00:08 gerald ] Original commit 
1.30 astro/nightfall/Makefile
1.16 benchmarks/himenobench/Makefile
1.15 benchmarks/hpl/Makefile
1.5 biology/crux/Makefile
1.45 biology/molden/Makefile
1.20 biology/ortep3/Makefile
1.29 biology/platon/Makefile
1.18 biology/psi88/Makefile
1.39 biology/tinker/Makefile
1.30 cad/calculix/Makefile

(Only the first 10 of 107 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr
Sat, 8 Aug 2009
[ 13:26 erwin ] Original commit 
1.4 biology/crux/Makefile
Fix PKGORIGIN

Submitted by:   pointyhat
Sun, 21 Jun 2009
[ 06:18 jasone ] Original commit 
1.3 biology/crux/Makefile
1.2 biology/crux/distinfo
1.3 biology/crux/pkg-plist
Update to Crux 1.1.0.

Fix the ATLAS/LAPACK build option.
Wed, 10 Jun 2009
[ 01:25 jasone ] Original commit 
1.2 biology/crux/Makefile
1.2 biology/crux/pkg-plist
Change CONFIGURE_ENV --> USE_CSTD. [1]

Add missing pkg-plist entry for Parsing.so. [2]

Change RUN_DEPENDS --> LIB_DEPENDS for optional math/atlas dependency.

Submitted by:   [1] erwin
Reported by:    [2] QAT
Mon, 8 Jun 2009
[ 23:49 jasone ] Original commit 
1.108 biology/Makefile
1.1 biology/crux/Makefile
1.1 biology/crux/distinfo
1.1 biology/crux/pkg-descr
1.1 biology/crux/pkg-plist
Add the biology/crux port.

Number of commits found: 29

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