non port: biology/cufflinks/Makefile |
Number of commits found: 19 |
Tuesday, 13 Feb 2024
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14:44 Dima Panov (fluffy)
devel/boost: bump consumers after library update
db61653 |
Wednesday, 27 Sep 2023
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14:36 Dima Panov (fluffy)
devel/boost*: bump all consumers after 1.83.0
21d8008 |
Thursday, 27 Apr 2023
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18:25 Dima Panov (fluffy)
*/*: bump all direct Boost cunsumers
3e45e8e |
Sunday, 23 Apr 2023
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09:09 Gerald Pfeifer (gerald)
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
8d3e020 |
Monday, 16 Jan 2023
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19:32 Dima Panov (fluffy)
*/*: bump libboost*.so libraries consumert after Boost upgrade
e1287d0 |
Wednesday, 7 Sep 2022
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21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Friday, 12 Aug 2022
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14:46 Dima Panov (fluffy)
*/*: bump all consumers after recent boost upgrade
4cf39de |
Thursday, 28 Jul 2022
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03:43 Yuri Victorovich (yuri)
biology/cufflinks: Unbreak
8fd55d4 |
Sunday, 22 May 2022
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20:17 Dima Panov (fluffy)
biology/cufflinks: mark as BROKEN after recent boost upgrade
PR: 246106
1054b6f |
Monday, 10 Jan 2022
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15:15 Stefan Eßer (se)
Fix CONFLICTS entries of multiple ports
There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.
This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.
Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port
cannot conflict with itself (due to logic in bsd.port.mk that
supresses the pattern match result in that case).
A few ports that set the conflicts variables depending on complex
conditions (e.g. port options), have been left unmodified, despite
probably containing outdated package names.
These changes should only affect the installation of locally built
ports, not the package building with poudriere. They should give an
early indication of the install conflict in cases where currently
the pkg command aborts an installation when it detects that an
existing file would be overwritten,
Approved by: portmgr (implicit)
bcaf25a |
Wednesday, 7 Apr 2021
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08:09 Mathieu Arnold (mat)
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
cf118cc |
Tuesday, 6 Apr 2021
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14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Saturday, 12 Dec 2020
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17:04 thierry
- Upgrade math/eigen3 to 3.3.8;
- Add some dependencies which might be detected by Find_Package but not
registered;
- Bump PORTREVISION of consumers.
PR: 250833
Submitted by: /me
Approved by: tcberner@ (KDE / maintainer) + exp-run
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Monday, 3 Aug 2020
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17:40 jwb
biology/htslib: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags
Bump PORTREVISION on dependents that don't require additional patching
PR: 248089
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Wednesday, 8 Jul 2020
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10:37 pkubaj
biology/cufflinks: fix build on GCC architectures
Using Boost requires modern compiler.
MFH: 2020Q3 (fix build blanket)
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Tuesday, 31 Mar 2020
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06:42 yuri
biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89
Add the pull request that fixes the boost::thread build failures.
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Wednesday, 11 Dec 2019
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17:53 jbeich
devel/boost-*: update to 1.72.0
Changes: http://www.boost.org/users/history/version_1_72_0.html
PR: 241449
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D22136
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Monday, 19 Aug 2019
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15:35 jbeich
devel/boost-*: update to 1.71.0
Changes: http://www.boost.org/users/history/version_1_71_0.html
PR: 238827
Exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D20774
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Saturday, 25 May 2019
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22:28 yuri
New port: biology/cufflinks: Cufflinks assembles transcripts, estimates their
abundance, etc
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Number of commits found: 19 |