Port details on branch 2022Q3 |
- diamond BLAST-compatible local sequence aligner
- 2.1.9 biology =0 2.1.9Version of this port present on the latest quarterly branch.
- Maintainer: jrm@FreeBSD.org
- Port Added: 2016-05-06 08:45:09
- Last Update: 2024-02-04 19:41:51
- Commit Hash: 92b051a
- License: GPLv3
- WWW:
- http://ab.inf.uni-tuebingen.de/software/diamond/
- Description:
- DIAMOND is a BLAST-compatible local aligner for mapping protein and translated
DNA query sequences against a protein reference database (BLASTP and BLASTX
alignment mode). The speedup over BLAST is up to 20,000 on short reads at a
typical sensitivity of 90-99% relative to BLAST depending on the data and
settings.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- diamond>0:biology/diamond
- To install the port:
- cd /usr/ports/biology/diamond/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/diamond
- pkg install diamond
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: diamond
- Flavors: there is no flavor information for this port.
- ONLY_FOR_ARCHS: aarch64 amd64 powerpc64 powerpc64le
- distinfo:
- TIMESTAMP = 1707069968
SHA256 (bbuchfink-diamond-v2.1.9_GH0.tar.gz) = 4cde9df78c63e8aef9df1e3265cd06a93ce1b047d6dba513a1437719b70e9d88
SIZE (bbuchfink-diamond-v2.1.9_GH0.tar.gz) = 5946668
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- cmake : devel/cmake-core
- ninja : devel/ninja
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_diamond
- USES:
- cmake
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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