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Ukraine
Some details on the 2023-01-16 website outage.
We just rebooted with several updates: * new HMTLify code * no port maintainer is now highly visible (e.g. https://freshports.org/security/sssd/) * fixed search logic error when using plain/ text details at https://github.com/FreshPorts/freshports/releases/tag/2.2.34
non port: biology/diamond/Makefile
SVNWeb

Number of commits found: 79

Wed, 7 Sep 2022
[ 21:10 Stefan E├čer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sun, 24 Apr 2022
[ 17:50 Joseph Mingrone (jrm) search for other commits by this committer ]    commit hash:d9f5d5d949ea138ba4d965dd7d84c51758ea0ed8  commit hash:d9f5d5d949ea138ba4d965dd7d84c51758ea0ed8  commit hash:d9f5d5d949ea138ba4d965dd7d84c51758ea0ed8  d9f5d5d 
biology/diamond: Update to 2.0.15

https://github.com/bbuchfink/diamond/releases/tag/v2.0.15

Sponsored by:	The FreeBSD Foundation
Thu, 13 Jan 2022
[ 17:42 Joseph Mingrone (jrm) search for other commits by this committer ]    commit hash:7c428e83c0070adce767c19a0e806d1793d4ad8a  commit hash:7c428e83c0070adce767c19a0e806d1793d4ad8a  commit hash:7c428e83c0070adce767c19a0e806d1793d4ad8a  7c428e8 
biology/diamond: Update to 2.0.14

https://github.com/bbuchfink/diamond/releases/tag/v2.0.14

Sponsored by:	The FreeBSD Foundation
Thu, 11 Nov 2021
[ 17:17 Joseph Mingrone (jrm) search for other commits by this committer ]    commit hash:84e457ed42919d5b23eb4e23f75314dad9f1f767  commit hash:84e457ed42919d5b23eb4e23f75314dad9f1f767  commit hash:84e457ed42919d5b23eb4e23f75314dad9f1f767  84e457e 
biology/diamond: Update to 2.0.13

This update fixes a bug that caused invalid bit scores in frameshift
alignment mode.
Tue, 12 Oct 2021
[ 15:40 Joseph Mingrone (jrm) search for other commits by this committer ]    commit hash:523d2537b4a95a59e720f66d560529e1938c796f  commit hash:523d2537b4a95a59e720f66d560529e1938c796f  commit hash:523d2537b4a95a59e720f66d560529e1938c796f  523d253 
biology/diamond: Update to 2.0.12

https://github.com/bbuchfink/diamond/releases/tag/v2.0.12
Sat, 9 Oct 2021
[ 13:49 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:b6994dfc3e9f38415b9f699e35cd788e7d36bc03  commit hash:b6994dfc3e9f38415b9f699e35cd788e7d36bc03  commit hash:b6994dfc3e9f38415b9f699e35cd788e7d36bc03  b6994df 
biology/diamond: enable on powerpc64le
Fri, 8 Oct 2021
[ 18:19 Piotr Kubaj (pkubaj) search for other commits by this committer ]    commit hash:096fef40c53a0bcc585624139de0109511580649  commit hash:096fef40c53a0bcc585624139de0109511580649  commit hash:096fef40c53a0bcc585624139de0109511580649  096fef4 
biology/diamond: enable on powerpc64
[ 16:25 Mikael Urankar (mikael) search for other commits by this committer ]    commit hash:63de6c3db611788a528afe985cd46fbe055b439a  commit hash:63de6c3db611788a528afe985cd46fbe055b439a  commit hash:63de6c3db611788a528afe985cd46fbe055b439a  63de6c3 
biology/diamond: Enable on aarch64.
Tue, 6 Jul 2021
[ 13:15 Joseph Mingrone (jrm) search for other commits by this committer ]    commit hash:d0bf21ba1d9d8c8270615f788349a51586c1e8db  commit hash:d0bf21ba1d9d8c8270615f788349a51586c1e8db  commit hash:d0bf21ba1d9d8c8270615f788349a51586c1e8db  d0bf21b 
biology/diamond: Update to 2.0.11-1

Includes a build fix for 2.0.11 on FreeBSD

https://github.com/bbuchfink/diamond/releases/tag/v2.0.11
Sat, 3 Jul 2021
[ 16:25 Joseph Mingrone (jrm) search for other commits by this committer ]    commit hash:43358569be1f5f0766b93f49dbb91e0eb8ed1fd3  commit hash:43358569be1f5f0766b93f49dbb91e0eb8ed1fd3  commit hash:43358569be1f5f0766b93f49dbb91e0eb8ed1fd3  4335856 
biology/diamond: Update to 2.0.10

https://github.com/bbuchfink/diamond/releases/tag/v2.0.10
Tue, 13 Apr 2021
[ 00:55 Joseph Mingrone (jrm) search for other commits by this committer ]    commit hash:46fc7df8540c256facd27c205897db46857d730e  commit hash:46fc7df8540c256facd27c205897db46857d730e  commit hash:46fc7df8540c256facd27c205897db46857d730e  46fc7df 
biology/diamond: Update to 2.0.9

https://github.com/bbuchfink/diamond/releases/tag/v2.0.9
Wed, 7 Apr 2021
[ 08:09 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc  (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Thu, 11 Mar 2021
[ 12:41 jrm search for other commits by this committer ] Original commit   Revision:568088
biology/diamond: Update to 2.0.8

https://github.com/bbuchfink/diamond/releases/tag/v2.0.8
Wed, 17 Feb 2021
[ 16:43 jrm search for other commits by this committer ] Original commit   Revision:565520
biology/diamond: Update to 2.0.7

https://github.com/bbuchfink/diamond/releases/tag/v2.0.7
Sun, 20 Dec 2020
[ 20:21 jrm search for other commits by this committer ] Original commit   Revision:558772
biology/diamond: Update to version 2.0.6

https://github.com/bbuchfink/diamond/releases/tag/v2.0.6
Tue, 1 Dec 2020
[ 22:27 jrm search for other commits by this committer ] Original commit   Revision:556797
biology/diamond: Update to version 2.0.5

https://github.com/bbuchfink/diamond/releases/tag/v2.0.5
Sun, 30 Aug 2020
[ 16:14 jrm search for other commits by this committer ] Original commit   Revision:547066
biology/diamond: Update to version 2.0.4

Upstream changes:
https://github.com/bbuchfink/diamond/releases/tag/v2.0.3
https://github.com/bbuchfink/diamond/releases/tag/v2.0.4

Port changes:
Remove a patch that was upstreamed:
https://github.com/bbuchfink/diamond/pull/378
Fri, 7 Aug 2020
[ 11:20 jrm search for other commits by this committer ] Original commit   Revision:544321
biology/diamond: Update to version 2.0.2

Upstream changes:
https://github.com/bbuchfink/diamond/releases/tag/v2.0.1
https://github.com/bbuchfink/diamond/releases/tag/v2.0.2
Tue, 28 Jul 2020
[ 02:39 jrm search for other commits by this committer ] Original commit   Revision:543567
biology/diamond: Update to version 2.0.0

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v2.0.0
Fri, 3 Jul 2020
[ 11:22 jrm search for other commits by this committer ] Original commit   Revision:541097
biology/diamond: Update to version 0.9.36

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.36
Sat, 27 Jun 2020
[ 16:26 jrm search for other commits by this committer ] Original commit   Revision:540624
biology/diamond: Update to version 0.9.35

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.35
Fri, 12 Jun 2020
[ 12:12 jrm search for other commits by this committer ] Original commit   Revision:538606
biology/diamond: Update to version 0.9.34

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.34
Wed, 3 Jun 2020
[ 21:44 jrm search for other commits by this committer ] Original commit   Revision:537853
biology/diamond: Update to version 0.9.33

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.33
Fri, 24 Apr 2020
[ 23:04 jrm search for other commits by this committer ] Original commit   Revision:532906
biology/diamond: Update to version 0.9.32

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.32
Sat, 21 Mar 2020
[ 22:11 jrm search for other commits by this committer ] Original commit   Revision:528881
biology/diamond: Update to version 0.9.31.2

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.31

Also include two additional commits that fix a build error.
Mon, 3 Feb 2020
[ 15:55 jrm search for other commits by this committer ] Original commit   Revision:525045
biology/diamond: Update to version 0.9.30

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.30
Wed, 20 Nov 2019
[ 17:14 jrm search for other commits by this committer ] Original commit   Revision:518039
biology/diamond: Update to v0.9.29

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.29
Thu, 7 Nov 2019
[ 14:12 jrm search for other commits by this committer ] Original commit   Revision:516974
biology/diamond: Update to version 0.9.28

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.28
Sun, 3 Nov 2019
[ 01:34 jrm search for other commits by this committer ] Original commit   Revision:516379
biology/diamond: Update to version 0.9.27 (plus one fix)

Since compiling from source no longer performs a native build, remove
-mtune=generic from CLFAGS when package building.

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.27
Wed, 18 Sep 2019
[ 18:45 jrm search for other commits by this committer ] Original commit   Revision:512282
biology/diamond: Update to version 0.9.26

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.26
Sun, 4 Aug 2019
[ 23:35 jrm search for other commits by this committer ] Original commit   Revision:508134
biology/diamond: Update to version 0.9.25

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.25
Mon, 31 Dec 2018
[ 19:00 jrm search for other commits by this committer ] Original commit   Revision:488819
biology/diamond: Update to version 0.9.24

Port changes: Tune for package building based on the author's
recommendation.

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.24
Tue, 25 Dec 2018
[ 20:25 tcberner search for other commits by this committer ] Original commit   Revision:488341 (Only the first 10 of 1277 ports in this commit are shown above. View all ports for this commit)
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
Mon, 17 Dec 2018
[ 19:12 jrm search for other commits by this committer ] Original commit   Revision:487707
biology/diamond: Update to 0.9.23 plus fixes after release

Also:
- update license since upstream changed to GPLv3
- only build/package for amd64, since it is untested on other architectures
  and currently does not build on i386

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.23
Mon, 14 May 2018
[ 17:17 jrm search for other commits by this committer ] Original commit   Revision:469925
biology/diamond: Update to version 0.9.22

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.22
Fri, 20 Apr 2018
[ 21:23 jrm search for other commits by this committer ] Original commit   Revision:467847
biology/diamond: Update to version 0.9.21

Upstream changes: https://github.com/bbuchfink/diamond/releases
Sat, 17 Mar 2018
[ 15:29 jrm search for other commits by this committer ] Original commit   Revision:464826
biology/diamond: Update to version 0.9.19

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.19
Thu, 15 Mar 2018
[ 02:28 jrm search for other commits by this committer ] Original commit   Revision:464549
biology/diamond: Update to version 0.9.18-49

Pull in commits after the 0.9.18 release for build fixes.

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.18
Thu, 1 Feb 2018
[ 19:20 jrm search for other commits by this committer ] Original commit   Revision:460624
biology/diamond: Update to version 0.9.17

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.17
Wed, 13 Dec 2017
[ 16:31 jrm search for other commits by this committer ] Original commit   Revision:456220
biology/diamond: Update to version 0.9.14

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.14
Fri, 17 Nov 2017
[ 20:11 jrm search for other commits by this committer ] Original commit   Revision:454383
biology/diamond: Update to version 0.9.13

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.13
Wed, 8 Nov 2017
[ 16:06 jrm search for other commits by this committer ] Original commit   Revision:453752
biology/diamond: Update to version 0.9.12

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.12
Fri, 3 Nov 2017
[ 03:45 jrm search for other commits by this committer ] Original commit   Revision:453387
biology/diamond: Update to 0.9.11

Upstream changes: https://github.com/bbuchfink/diamond/releases
Tue, 15 Aug 2017
[ 20:45 jrm search for other commits by this committer ] Original commit   Revision:448009
biology/diamond: Update to version 0.9.10

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.10
Mon, 3 Jul 2017
[ 19:12 jrm search for other commits by this committer ] Original commit   Revision:444981
biology/diamond: Update to version 0.9.9

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.9
Fri, 16 Jun 2017
[ 14:49 jrm search for other commits by this committer ] Original commit   Revision:443706
biology/diamond: Update to version 0.9.8
Sat, 3 Jun 2017
[ 12:32 jrm search for other commits by this committer ] Original commit   Revision:442478
biology/diamond: Update to version 0.9.4

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.4
Mon, 29 May 2017
[ 15:24 jrm search for other commits by this committer ] Original commit   Revision:441991
biology/diamond: Update to version 0.9.3

Upstream changes: https://github.com/bbuchfink/diamond/releases

Approved by:	swills (mentor, implicit)
Tue, 23 May 2017
[ 11:03 jrm search for other commits by this committer ] Original commit   Revision:441513
biology/diamond: Update to version 0.9.1

Upstream changes: https://github.com/bbuchfink/diamond/releases

- License has changed to AGPLv3

Approved by:	swills (mentor, implicit)
Fri, 21 Apr 2017
[ 14:46 jrm search for other commits by this committer ] Original commit   Revision:439081
biology/diamond: Update to version 0.8.38

- The base compilers meet all of Diamond's requirements, so remove
  compiler:c++11-lang from USES definition.
- Upstream release notes:
  https://github.com/bbuchfink/diamond/releases/tag/v0.8.38

Approved by:	swills (mentor, implicit)
Sun, 2 Apr 2017
[ 10:55 jrm search for other commits by this committer ] Original commit   Revision:437552
biology/diamond: Update to version 0.8.37

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.8.37

Approved by:	swills (mentor, implicit)
Sat, 1 Apr 2017
[ 15:23 gerald search for other commits by this committer ] Original commit   Revision:437439 (Only the first 10 of 1118 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
Sun, 12 Feb 2017
[ 14:04 jrm search for other commits by this committer ] Original commit   Revision:433945
biology/diamond: Update to version 0.8.36.

Approved by:	swills (mentor, implicit)
Sun, 5 Feb 2017
[ 22:23 jrm search for other commits by this committer ] Original commit   Revision:433463
biology/diamond: Update to version 0.8.35.

Version 0.8.35 fixes a compiler error on i386.

Approved by:	swills (mentor, implicit)
Mon, 23 Jan 2017
[ 13:19 jrm search for other commits by this committer ] Original commit   Revision:432214
biology/diamond: Update to version 0.8.34.

Upstream changelog: https://github.com/bbuchfink/diamond/releases

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D9288
Mon, 16 Jan 2017
[ 13:38 jrm search for other commits by this committer ] Original commit   Revision:431644
biology/diamond: Update to version 0.8.32.

Upstream changes: https://github.com/bbuchfink/diamond/releases

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D9197
Thu, 12 Jan 2017
[ 23:23 jrm search for other commits by this committer ] Original commit   Revision:431331
biology/diamond: Update to version 0.8.31.

Upstream changelog:

  - Added compositional score adjustments (option --comp-based-stats
    (0,1)). This is a useful feature for filtering false positive hits and
    is enabled by default.

  - Removed --single-domain option and replaced by --max-hsps, to set the
    maximum number of Hsps per query/subject pair, to be consistent with
    BLAST. This option is set to 1 by default as getting more than 1 Hsp
    per subject seems to be confusing users.

  - Added option --no-self-hits to filter identical self-hits.

Approved by:	AMDmi3 (mentor)
Differential Revision:	https://reviews.freebsd.org/D9134
Fri, 30 Dec 2016
[ 16:27 jrm search for other commits by this committer ] Original commit   Revision:429998
biology/diamond: Update to version 0.8.30

Upstream changes:
- slightly improved sensitivity
- added option to report unaligned queries: --unal (0=no, 1=yes)
- pairwise, XML and SAM format will report unaligned queries by default
- added option to filter alignments by subject cover (--subject-cover)

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D9000
Sun, 18 Dec 2016
[ 13:52 jrm search for other commits by this committer ] Original commit   Revision:428850
biology/diamond: Update to version 0.8.29

Upstream change: fixed an issue that could cause a crash when using view on
incomplete DAA files

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8832
Mon, 28 Nov 2016
[ 15:18 jrm search for other commits by this committer ] Original commit   Revision:427328
biology/diamond: Update to version 0.8.28

Correct LICENSE and set LICENSE_FILE

Upstream changelog:
- support for gzip compressed files containing multiple gzip streams
- support for the BLAST pairwise format (option -f 0)
- slightly improved sensitivity

Approved by:	AMDmi3 (mentor)
Differential Revision:	https://reviews.freebsd.org/D8652
Sun, 6 Nov 2016
[ 05:42 jrm search for other commits by this committer ] Original commit   Revision:425464
biology/diamond: Update to version 0.8.26

Release notes: https://github.com/bbuchfink/diamond/releases/tag/v0.8.26

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8447
Mon, 17 Oct 2016
[ 14:17 jrm search for other commits by this committer ] Original commit   Revision:424118
biology/diamond: update to version 0.8.24

Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8268
Mon, 10 Oct 2016
[ 04:33 jrm search for other commits by this committer ] Original commit   Revision:423635
biology/diamond: update to version 0.8.23

Upstream release notes:

Added option to change the genetic code used for translation of query in
blastx mode (option --query-gencode, see here for a list of possible values:
https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi).

Approved by:	AMDmi3 (mentor)
Differential Revision:	https://reviews.freebsd.org/D8202
Fri, 23 Sep 2016
[ 21:42 jrm search for other commits by this committer ] Original commit   Revision:422697 (Only the first 10 of 16 ports in this commit are shown above. View all ports for this commit)
Update email address to jrm@FreeBSD.org for ports that I maintain

Reviewed by:	mat, swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D7995
Tue, 13 Sep 2016
[ 17:50 amdmi3 search for other commits by this committer ] Original commit   Revision:422046
- Update to 0.8.22

PR:		212603
Submitted by:	jrm@ftfl.ca (maintainer)
Tue, 6 Sep 2016
[ 06:34 wen search for other commits by this committer ] Original commit   Revision:421406
- Update to 0.8.20

PR:		212399
Submitted by:	jrm@ftfl.ca(maintainer)
Thu, 25 Aug 2016
[ 18:49 pawel search for other commits by this committer ] Original commit   Revision:420873
Update to version 0.8.19

PR:		212145
Submitted by:	Joseph Mingrone (maintainer)
Sun, 14 Aug 2016
[ 21:47 brd search for other commits by this committer ] Original commit   Revision:420200
Update biology/diamond to 0.8.18.

PR:		211845
Submitted by:	Joseph Mingrone <jrm@ftfl.ca> (maintainer)
Approved by:	bdrewery (implicit)
Fri, 5 Aug 2016
[ 21:24 pawel search for other commits by this committer ] Original commit   Revision:419710
Update to version 0.8.17

PR:		211582
Submitted by:	Joseph Mingrone (maintainer)
Sun, 24 Jul 2016
[ 18:06 riggs search for other commits by this committer ] Original commit   Revision:419014
Update to upstream release 0.8.16

PR:		211335
Submitted by:	jrm@ftfl.ca (maintainer)
Thu, 14 Jul 2016
[ 16:53 pawel search for other commits by this committer ] Original commit   Revision:418546
Trim excess tabs, no-op change
[ 16:49 pawel search for other commits by this committer ] Original commit   Revision:418544
Update to version 0.8.14

PR:		211078
Submitted by:	Joseph Mingrone (maintainer)
Thu, 7 Jul 2016
[ 15:46 amdmi3 search for other commits by this committer ] Original commit   Revision:418187
- Update to 0.8.11

PR:		210877
Submitted by:	jrm@ftfl.ca (maintainer)
Thu, 30 Jun 2016
[ 01:37 junovitch search for other commits by this committer ] Original commit   Revision:417803
biology/diamond: update 0.8.6 -> 0.8.9

PR:		210710
Submitted by:	Joseph Mingrone <jrm@ftfl.ca> (maintainer)
Fri, 17 Jun 2016
[ 19:53 rm search for other commits by this committer ] Original commit   Revision:417033
biology/diamond: update to 0.8.6

PR:		210345
Submitted by:	Joseph Mingrone <jrm@ftfl.ca> (maintainer)
Thu, 9 Jun 2016
[ 01:39 matthew search for other commits by this committer ] Original commit   Revision:416575
Update to 0.8.5

PR:		209611
Submitted by:	jrm@ftfl.ca (maintainer)
Wed, 18 May 2016
[ 16:22 antoine search for other commits by this committer ] Original commit   Revision:415454
Fix DEPENDS
Fri, 6 May 2016
[ 08:45 wen search for other commits by this committer ] Original commit   Revision:414686
DNA query sequences against a protein reference database (BLASTP and BLASTX
alignment mode). The speedup over BLAST is up to 20,000 on short reads at a
typical sensitivity of 90-99% relative to BLAST depending on the data and
settings.

WWW: http://ab.inf.uni-tuebingen.de/software/diamond/

PR:		208998
Submitted by:	jrm@ftfl.ca

Number of commits found: 79