| non port: biology/emboss/distinfo |
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SVNWeb
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Number of commits found: 31 |
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Fri, 24 Sep 2021
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[ 21:34 Jason W. Bacon (jwb)  ]    c68b6dc
biology/emboss: Add "emboss" command in ${LOCALBASE}/bin
Standard emboss commands are installed under a special prefix because
of multiple conflicts. The emboss command turns the standard commands
into subcommands, so no special PATH is needed.
/usr/local/emboss/bin/needle [args]
can be run as
emboss needle [args]
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Mon, 6 Sep 2021
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[ 15:13 Jason W. Bacon (jwb) ] e47c577
biology/emboss: Put emboss-shell in default PATH
PREFIX is overridden by default in the port Makefile, so PREFIX/bin
is not normally in PATH. The purpose of emboss-shell is to prepend
PREFIX/bin to PATH to give access to emboss tools.
Also fix tcsh detection.
PR: 258316
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[ 14:21 Jason W. Bacon (jwb) ] fa2e0b8
biology/emboss: Add emboss-shell: Run subshell with proper PATH
Also silence portlint and stage-qa warnings
PR: 258316
Approved by: wen
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Thu, 5 Jun 2014
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[ 03:28 miwi ]  
- Update to 6.6.0
- Stage support
PR: 190508
Submitted by: Muhammad Moinur Rahman
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Sat, 2 Jul 2011
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[ 11:33 miwi ]
- kick MD5
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Wed, 7 Apr 2010
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[ 01:16 wen ]
- Update to 6.2.0
Submitted by: Wen Heping(myself)
Approved by: maintainer(via Email)
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Sat, 14 Mar 2009
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[ 15:16 miwi ]
- Force commit to correct the entry
- Update to 6.0.1
PR: 132504
Submitted by: Wen Heping <wenheping@gmail.com>
Approved by: maintainer
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[ 15:14 miwi ]
- Update to 0.1.24
PR: 132527
Submitted by: Wen Heping <wenheping@gmail.com>
Approved by: maintainer
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Sun, 13 Apr 2008
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[ 07:22 rafan ] (Only the first 10 of 14 ports in this commit are shown above.  )
- Update to 5.0.0
PR: ports/122437
Submitted by: Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
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Fri, 31 Mar 2006
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[ 09:43 thierry ] (Only the first 10 of 23 ports in this commit are shown above. )
For EMBOSS:
This patch brings EMBOSS up to date with the current version.
i. The patches included in files/ are bugfixes for files in
EMBOSS-3.0.0 that appeared after the release. They are
documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README
This is just 'for the record' so that we remember to remove these
patches in the next update.
ii. EMBOSS is now installed by default in LOCALBASE/emboss
This is to avoid CONFLICTS with other ports that install files
with the same names. Installing EMBOSS to another PREFIX is also
possible.(Only the first 15 lines of the commit message are shown above )
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Sun, 22 Jan 2006
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[ 08:20 edwin ] (Only the first 10 of 30 ports in this commit are shown above. )
SHA256ify
Approved by: krion@
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Sun, 29 May 2005
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[ 18:26 pav ]
- Update to 2.10.0
PR: ports/81579
Submitted by: "Choe, Cheng-Dae" <whitekid@gmail.com>
Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
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Fri, 26 Nov 2004
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[ 01:11 sem ]
- Update to 2.9.0
- Pass maintainership to submitter
PR: ports/74333
Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar>
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Fri, 27 Sep 2002
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[ 08:58 wjv ]
- Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)
Submitted by: kris, bento
Approved by: Implicitly by first rule of ports freeze, I hope!
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Fri, 5 Jul 2002
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[ 10:09 wjv ]
- Update to version 2.4.1
- Unmark BROKEN
- Start adding support for Jemboss Java-based GUI (not active yet)
PR: 40198 ; many private requests
Submitted by: Tilman Linneweh <tilman@arved.de> (2.4.1 update)
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Fri, 18 Jan 2002
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[ 14:04 wjv ]
- Update to version 2.2.0 - Update included EMBASSY package EMNU - Fix a
long-standing bug in Makefile that would preclude PKGMESSAGE from being
generated properly - Consider this an interim update merely to track the
latest version - more work is required to activate the newly included
"Jemboss" Java GUI interface
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Fri, 3 Aug 2001
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[ 12:32 wjv ]
- Update port to version 2.0.1 - Add two new EMBASSY applications, MEME and
HMMER.
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Fri, 15 Jun 2001
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[ 13:11 wjv ]
Update to 1.13.3; remove bogus file.
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Wed, 30 May 2001
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[ 15:34 kevlo ]
Update to version 1.13.1
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Mon, 7 May 2001
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[ 13:18 jeh ]
Update the EMBOSS suite (biology/emboss) to version 1.12.0
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Mon, 12 Mar 2001
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[ 10:33 nbm ]
Update the EMBOSS suite to v1.11.0
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Wed, 28 Feb 2001
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[ 15:58 kevlo ]
Update to version 1.10.1
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Tue, 20 Feb 2001
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[ 15:51 kevlo ]
Update to version 1.10.0
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Mon, 29 Jan 2001
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[ 15:48 kevlo ]
- Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1 - Update the EMBASSY
package EMNU from 1.0.2 to 1.0.3 - Merged the four pkg-plist* files into one
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Wed, 24 Jan 2001
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[ 11:36 kevlo ]
Upgrade to version 1.9.0
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Mon, 4 Dec 2000
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[ 13:00 roam ]
Update distfiles' checksums after the distfiles have been rerolled yet again
without changing names or versions. Also add a new MASTER_SITE.
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Thu, 30 Nov 2000
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[ 20:13 roam ]
Distfile tarballs were rerolled without notice due to a minor bug.
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Tue, 28 Nov 2000
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[ 01:43 jeh ]
- Update port biology/emboss from 1.7.0 to 1.8.0
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Mon, 13 Nov 2000
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[ 13:48 jeh ]
- This is a fairly extensive rework of this port. - "EMBASSY" applications are
third party tools which have been adapted to function as part of EMBOSS, but
which are not included with the base EMBOSS distribution for licensing or
other reasons. This new version of the EMBOSS port now contains the three
current EMBASSY applications as well, and during installation the user is
presented with a dialog(1) menu to choose which of these should be
isntalled.
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Wed, 1 Nov 2000
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[ 11:49 jeh ]
Update to version 1.7.0
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Tue, 10 Oct 2000
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[ 05:54 kevlo ]
- Update to 1.6.0 - Reorder packing list
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Number of commits found: 31 |
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