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Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: biology/emboss/pkg-message
SVNWeb

Number of commits found XX: 5

Fri, 31 Mar 2006
[ 09:43 thierry ] Original commit 
1.304 UPDATING
1.6 biology/embassy/Makefile
1.4 biology/embassy/distinfo
1.2 biology/embassy/files/domainatrix-patch-Makefile.in
1.2 biology/embassy/files/emnu-patch-Makefile.in
1.3 biology/embassy/pkg-plist
1.47 biology/emboss/Makefile
1.26 biology/emboss/distinfo
1.1 biology/emboss/files/patch-ajindex.c
1.1 biology/emboss/files/patch-ajindex.h

(Only the first 10 of 23 ports in this commit are shown above. View all ports for this commit)
For EMBOSS:

        This patch brings EMBOSS up to date with the current version.

        i.   The patches included in files/ are bugfixes for files in
             EMBOSS-3.0.0 that appeared after the release. They are
             documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README

             This is just 'for the record' so that we remember to remove these
             patches in the next update.

        ii.  EMBOSS is now installed by default in LOCALBASE/emboss
             This is to avoid CONFLICTS with other ports that install files
             with the same names. Installing EMBOSS to another PREFIX is also
             possible.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 26 Nov 2004
[ 01:11 sem ] Original commit 
1.41 biology/emboss/Makefile
1.23 biology/emboss/distinfo
1.5 biology/emboss/files/patch-aa
1.2 biology/emboss/files/patch-ajax::ajjava.c
1.2 biology/emboss/files/patch-configure
1.2 biology/emboss/files/patch-emboss-emboss.default.template
1.6 biology/emboss/pkg-message
1.20 biology/emboss/pkg-plist
1.4 biology/emboss/scripts/configure.emboss
- Update to 2.9.0
- Pass maintainership to submitter

PR:             ports/74333
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>
Wed, 11 Jul 2001
[ 14:58 wjv ] Original commit 
unknown biology/emboss/pkg-message
Remove obsolete pointer to online documentation.    
Tue, 20 Feb 2001
[ 15:51 kevlo ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/files/patch-emboss-acd-emboss.default
unknown biology/emboss/pkg-message
unknown biology/emboss/pkg-plist
Update to version 1.10.0    
Tue, 28 Nov 2000
[ 01:43 jeh ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-message
unknown biology/emboss/pkg-plist
- Update port biology/emboss from 1.7.0 to 1.8.0    

Number of commits found XX: 5

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