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Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: biology/emboss/pkg-plist
SVNWeb

Number of commits found XX: 26

Mon, 20 Oct 2014
[ 07:10 bapt ] Original commit   Revision:371237
371237 biology/artemis/pkg-plist
371237 biology/biococoa/pkg-plist
371237 biology/crux/pkg-plist
371237 biology/emboss/pkg-plist
371237 biology/fasta3/pkg-plist
371237 biology/fastdnaml/pkg-plist
371237 biology/garlic/pkg-plist
371237 biology/hmmer/pkg-plist
371237 biology/iolib/pkg-plist
371237 biology/jalview/pkg-plist

(Only the first 10 of 36 ports in this commit are shown above. View all ports for this commit)
Cleanup plist
Thu, 5 Jun 2014
[ 03:28 miwi ] Original commit   Revision:356575
356575 biology/emboss/Makefile
356575 biology/emboss/distinfo
356575 biology/emboss/files/patch-Makefile.in
356575 biology/emboss/files/patch-emboss-Makefile.in
356575 biology/emboss/pkg-plist
- Update to 6.6.0
- Stage support

PR:		190508
Submitted by:	Muhammad Moinur Rahman
Wed, 7 Apr 2010
[ 01:16 wen ] Original commit 
1.60 biology/emboss/Makefile
1.30 biology/emboss/distinfo
1.28 biology/emboss/pkg-plist
- Update to 6.2.0

Submitted by:   Wen Heping(myself)
Approved by:    maintainer(via Email)
Sat, 14 Mar 2009
[ 15:16 miwi ] Original commit 
1.54 biology/emboss/Makefile
1.29 biology/emboss/distinfo
1.7 biology/emboss/pkg-descr
1.27 biology/emboss/pkg-plist
- Force commit to correct the entry
- Update to 6.0.1

PR:             132504
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
[ 15:14 miwi ] Original commit 
1.53 biology/emboss/Makefile
1.28 biology/emboss/distinfo
1.26 biology/emboss/pkg-plist
- Update to 0.1.24

PR:             132527
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
Sun, 13 Apr 2008
[ 07:22 rafan ] Original commit 
1.50 biology/emboss/Makefile
1.27 biology/emboss/distinfo
1.2 biology/emboss/files/patch-ajindex.c
1.2 biology/emboss/files/patch-ajindex.h
1.2 biology/emboss/files/patch-ajpdb.c
1.2 biology/emboss/files/patch-ajseqdb.c
1.2 biology/emboss/files/patch-dbxfasta.c
1.2 biology/emboss/files/patch-dbxflat.c
1.2 biology/emboss/files/patch-dbxgcg.c
1.2 biology/emboss/files/patch-embindex.c

(Only the first 10 of 14 ports in this commit are shown above. View all ports for this commit)
- Update to 5.0.0

PR:             ports/122437
Submitted by:   Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
[ 07:21 rafan ] Original commit 
1.24 biology/emboss/pkg-plist
- Sort pkg-plist before updating to 5.0.0

PR:             ports/122437
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Fri, 31 Mar 2006
[ 09:43 thierry ] Original commit 
1.304 UPDATING
1.6 biology/embassy/Makefile
1.4 biology/embassy/distinfo
1.2 biology/embassy/files/domainatrix-patch-Makefile.in
1.2 biology/embassy/files/emnu-patch-Makefile.in
1.3 biology/embassy/pkg-plist
1.47 biology/emboss/Makefile
1.26 biology/emboss/distinfo
1.1 biology/emboss/files/patch-ajindex.c
1.1 biology/emboss/files/patch-ajindex.h

(Only the first 10 of 23 ports in this commit are shown above. View all ports for this commit)
For EMBOSS:

        This patch brings EMBOSS up to date with the current version.

        i.   The patches included in files/ are bugfixes for files in
             EMBOSS-3.0.0 that appeared after the release. They are
             documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README

             This is just 'for the record' so that we remember to remove these
             patches in the next update.

        ii.  EMBOSS is now installed by default in LOCALBASE/emboss
             This is to avoid CONFLICTS with other ports that install files
             with the same names. Installing EMBOSS to another PREFIX is also
             possible.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Thu, 23 Feb 2006
[ 10:40 ade ] Original commit 
1.49 accessibility/at-spi/Makefile
1.23 accessibility/at-spi/pkg-plist
1.44 accessibility/atk/Makefile
1.22 accessibility/atk/pkg-plist
1.29 accessibility/dasher/Makefile
1.52 accessibility/gail/Makefile
1.30 accessibility/gail/pkg-plist
1.31 accessibility/gnomemag/Makefile
1.17 accessibility/gnomemag/pkg-plist
1.17 accessibility/gnomespeech/Makefile

(Only the first 10 of 2514 ports in this commit are shown above. View all ports for this commit)
Conversion to a single libtool environment.

Approved by:    portmgr (kris)
Sun, 29 May 2005
[ 18:26 pav ] Original commit 
1.43 biology/emboss/Makefile
1.24 biology/emboss/distinfo
1.21 biology/emboss/pkg-plist
- Update to 2.10.0

PR:             ports/81579
Submitted by:   "Choe, Cheng-Dae" <whitekid@gmail.com>
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Fri, 26 Nov 2004
[ 01:11 sem ] Original commit 
1.41 biology/emboss/Makefile
1.23 biology/emboss/distinfo
1.5 biology/emboss/files/patch-aa
1.2 biology/emboss/files/patch-ajax::ajjava.c
1.2 biology/emboss/files/patch-configure
1.2 biology/emboss/files/patch-emboss-emboss.default.template
1.6 biology/emboss/pkg-message
1.20 biology/emboss/pkg-plist
1.4 biology/emboss/scripts/configure.emboss
- Update to 2.9.0
- Pass maintainership to submitter

PR:             ports/74333
Submitted by:   Fernan Aguero <fernan(at)iib.unsam.edu.ar>
[ 00:25 kris ] Original commit 
1.19 biology/emboss/pkg-plist
Add missing files
Fri, 5 Jul 2002
[ 10:09 wjv ] Original commit 
1.28 biology/emboss/Makefile
1.21 biology/emboss/distinfo
1.1 biology/emboss/files/patch-ajax::ajjava.c
1.18 biology/emboss/pkg-plist
- Update to version 2.4.1
- Unmark BROKEN
- Start adding support for Jemboss Java-based GUI (not active yet)

PR:             40198 ; many private requests
Submitted by:   Tilman Linneweh <tilman@arved.de> (2.4.1 update)
Fri, 18 Jan 2002
[ 14:04 wjv ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-plist
- Update to version 2.2.0   - Update included EMBASSY package EMNU   - Fix a
long-standing bug in Makefile that would preclude PKGMESSAGE from     being
generated properly   - Consider this an interim update merely to track the
latest version - more     work is required to activate the newly included
"Jemboss" Java GUI     interface    
Fri, 3 Aug 2001
[ 12:32 wjv ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-descr
unknown biology/emboss/pkg-plist
unknown biology/emboss/scripts/configure.emboss
- Update port to version 2.0.1   - Add two new EMBASSY applications, MEME and
HMMER.    
Fri, 15 Jun 2001
[ 13:11 wjv ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-plist
unknown biology/emboss/pkg-plist.embassy
Update to 1.13.3; remove bogus file.    
Wed, 30 May 2001
[ 15:34 kevlo ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/files/patch-emboss-acd-emboss.default
unknown biology/emboss/files/patch-emboss-emboss.default.template
unknown biology/emboss/pkg-plist
unknown biology/emboss/pkg-plist.embassy
Update to version 1.13.1    
Mon, 7 May 2001
[ 13:18 jeh ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-plist
Update the EMBOSS suite (biology/emboss) to version 1.12.0    
Mon, 12 Mar 2001
[ 10:33 nbm ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-plist
Update the EMBOSS suite to v1.11.0    
Wed, 28 Feb 2001
[ 15:58 kevlo ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-plist
Update to version 1.10.1    
Tue, 20 Feb 2001
[ 15:51 kevlo ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/files/patch-emboss-acd-emboss.default
unknown biology/emboss/pkg-message
unknown biology/emboss/pkg-plist
Update to version 1.10.0    
Mon, 29 Jan 2001
[ 15:48 kevlo ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/files/patch-aa
unknown biology/emboss/files/patch-configure
unknown biology/emboss/files/patch-emboss-acd-emboss.default
unknown biology/emboss/pkg-plist
unknown biology/emboss/pkg-plist.EMNU
unknown biology/emboss/pkg-plist.MSE
unknown biology/emboss/pkg-plist.PHYLIP
unknown biology/emboss/pkg-plist.TOPO
- Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1   - Update the EMBASSY
package EMNU from 1.0.2 to 1.0.3   - Merged the four pkg-plist* files into one  
 
Wed, 24 Jan 2001
[ 11:36 kevlo ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-descr
unknown biology/emboss/pkg-plist
unknown biology/emboss/pkg-plist.EMNU
unknown biology/emboss/scripts/configure.emboss
Upgrade to version 1.9.0    
Tue, 28 Nov 2000
[ 01:43 jeh ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-message
unknown biology/emboss/pkg-plist
- Update port biology/emboss from 1.7.0 to 1.8.0    
Wed, 1 Nov 2000
[ 11:49 jeh ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-plist
Update to version 1.7.0    
Tue, 10 Oct 2000
[ 05:54 kevlo ] Original commit 
unknown biology/emboss/Makefile
unknown biology/emboss/distinfo
unknown biology/emboss/pkg-plist
- Update to 1.6.0   - Reorder packing list    

Number of commits found XX: 26

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