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Port details on branch 2022Q3
fastx-toolkit CLI tools for Short-Reads FASTA/FASTQ files preprocessing
0.0.14_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.0.14_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2015-09-25 18:33:28
Last Update: 2023-03-07 17:28:13
Commit Hash: d892482
License: AGPLv3+
WWW:
http://hannonlab.cshl.edu/fastx_toolkit/
Description:
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (29 items)
Collapse this list.
  1. /usr/local/share/licenses/fastx_toolkit-0.0.14_1/catalog.mk
  2. /usr/local/share/licenses/fastx_toolkit-0.0.14_1/LICENSE
  3. /usr/local/share/licenses/fastx_toolkit-0.0.14_1/AGPLv3+
  4. bin/fasta_clipping_histogram.pl
  5. bin/fasta_formatter
  6. bin/fasta_nucleotide_changer
  7. bin/fastq_masker
  8. bin/fastq_quality_boxplot_graph.sh
  9. bin/fastq_quality_converter
  10. bin/fastq_quality_filter
  11. bin/fastq_quality_trimmer
  12. bin/fastq_to_fasta
  13. bin/fastx_artifacts_filter
  14. bin/fastx_barcode_splitter.pl
  15. bin/fastx_clipper
  16. bin/fastx_collapser
  17. bin/fastx_nucleotide_distribution_graph.sh
  18. bin/fastx_nucleotide_distribution_line_graph.sh
  19. bin/fastx_quality_stats
  20. bin/fastx_renamer
  21. bin/fastx_reverse_complement
  22. bin/fastx_trimmer
  23. bin/fastx_uncollapser
  24. share/aclocal/ax_c_long_long.m4
  25. share/aclocal/ax_cxx_compile_stdcxx_11.m4
  26. share/aclocal/ax_cxx_header_stdcxx_tr1.m4
  27. @owner
  28. @group
  29. @mode
Collapse this list.
Dependency lines:
  • fastx_toolkit>0:biology/fastx-toolkit
Conflicts:
CONFLICTS_INSTALL:
  • autoconf-archive
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port:
cd /usr/ports/biology/fastx-toolkit/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/fastx-toolkit
  • pkg install fastx_toolkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: fastx_toolkit
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1678210010 SHA256 (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = af4f9fe59f8c91bdd2d735bdac1fd89f0549b2bc759313fe3b86948056aad1aa SIZE (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = 259576
Packages (timestamps in pop-ups are UTC):
fastx_toolkit
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.0.14_10.0.14_10.0.140.0.14_10.0.14_1-0.0.14-
FreeBSD:13:quarterly0.0.14_10.0.14_10.0.14_10.0.14_10.0.14_10.0.14_10.0.14_10.0.14_1
FreeBSD:14:latest0.0.14_10.0.14_10.0.140.0.14_10.0.14_10.0.14_1-0.0.14_1
FreeBSD:14:quarterly0.0.14_10.0.14_1-0.0.14_10.0.14_10.0.14_10.0.14_10.0.14_1
FreeBSD:15:latest0.0.14_10.0.14_1n/a0.0.14_1n/a0.0.14_10.0.14_10.0.14_1
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. pkgconf>=1.3.0_1 : devel/pkgconf
  2. autoconf>=2.71 : devel/autoconf
  3. automake>=1.16.5 : devel/automake
  4. libtoolize : devel/libtool
Runtime dependencies:
  1. perl5>=5.32.r0<5.33 : lang/perl5.32
Library dependencies:
  1. libgtextutils.so : biology/libgtextutils
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_fastx-toolkit
USES:
autoreconf libtool perl5 pkgconfig shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/agordon/fastx_toolkit/tar.gz/0.0.14?dummy=/
Collapse this list.

There are no commits on branch 2022Q3 for this port
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