Port details on branch 2022Q3 |
- flash Fast Length Adjustment of SHort reads
- 1.2.11 biology =0 1.2.11Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2021-08-23 17:30:09
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- License: GPLv3
- WWW:
- https://ccb.jhu.edu/software/FLASH/
- Description:
- FLASH (Fast Length Adjustment of SHort reads) is a very fast and
accurate software tool to merge paired-end reads from next-generation
sequencing experiments. FLASH is designed to merge pairs of reads when
the original DNA fragments are shorter than twice the length of reads.
The resulting longer reads can significantly improve genome assemblies.
They can also improve transcriptome assembly when FLASH is used to
merge RNA-seq data.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/flash/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/flash
- pkg install flash
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: flash
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1629671970
SHA256 (FLASH-1.2.11.tar.gz) = 685ca6f7fedda07434d8ee03c536f4763385671c4509c5bb48beb3055fd236ac
SIZE (FLASH-1.2.11.tar.gz) = 48889
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- This port is required by:
- for Run
-
- biology/biostar-tools
Configuration Options:
- No options to configure
- Options name:
- biology_flash
- USES:
- gmake
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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