notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)
Want a good monitor light? See my photosAll times are UTC
Ukraine
This referral link gives you 10% off a Fastmail.com account and gives me a discount on my Fastmail account.

Get notified when packages are built

A new feature has been added. FreshPorts already tracks package built by the FreeBSD project. This information is displayed on each port page. You can now get an email when FreshPorts notices a new package is available for something on one of your watch lists. However, you must opt into that. Click on Report Subscriptions on the right, and New Package Notification box, and click on Update.

Finally, under Watch Lists, click on ABI Package Subscriptions to select your ABI (e.g. FreeBSD:14:amd64) & package set (latest/quarterly) combination for a given watch list. This is what FreshPorts will look for.

non port: biology/gcta/Makefile

Number of commits found: 14

Friday, 21 Jun 2024
17:49 Thierry Thomas (thierry) search for other commits by this committer
*/*: bump PORTREVISION after the upgrade to OpenBLAS
commit hash: e2cd1133e68c54606b2b5e0c7b4dee0532a926fe commit hash: e2cd1133e68c54606b2b5e0c7b4dee0532a926fe commit hash: e2cd1133e68c54606b2b5e0c7b4dee0532a926fe commit hash: e2cd1133e68c54606b2b5e0c7b4dee0532a926fe e2cd113
Tuesday, 12 Dec 2023
19:03 Thierry Thomas (thierry) search for other commits by this committer Author: Eijiro Shibusawa
biology/gcta: chase the upgrade of OpenBLAS

GCTA should modify the LAPACK functios calls, this is a temporary fix.

See <https://github.com/jianyangqt/gcta/issues/59>.

PR:		273219
Approved by:	jwb@
commit hash: 22df0dbcfa877e85bf5c29d7ff6808f7116cafb7 commit hash: 22df0dbcfa877e85bf5c29d7ff6808f7116cafb7 commit hash: 22df0dbcfa877e85bf5c29d7ff6808f7116cafb7 commit hash: 22df0dbcfa877e85bf5c29d7ff6808f7116cafb7 22df0db
Sunday, 15 Oct 2023
11:49 Jason W. Bacon (jwb) search for other commits by this committer
biology/gcta: Add temporary hack for building on aarch64

Add USE_GCC to work around this issue with clang:

/usr/ports/biology/gcta/work/gcta-1.94.1/submods/plink-ng/2.0/ \
    plink2_base.h:1008:23: error: argument to '__builtin_neon_vshrq_n_v' \
    must be a constant integer
return R_CAST(VecW, _mm_srli_epi64(R_CAST(__m128i, vv), ct));
/usr/lib/clang/14.0.5/include/arm_neon.h:25260:24: note: expanded from \
    macro 'vshrq_n_u64'
__ret = (uint64x2_t) __builtin_neon_vshrq_n_v((int8x16_t)__s0, __p1, 51);
commit hash: f95880107ae1f12e660b08f24dacb3b88bf176bd commit hash: f95880107ae1f12e660b08f24dacb3b88bf176bd commit hash: f95880107ae1f12e660b08f24dacb3b88bf176bd commit hash: f95880107ae1f12e660b08f24dacb3b88bf176bd f958801
Saturday, 14 Oct 2023
12:52 Jason W. Bacon (jwb) search for other commits by this committer
biology/gcta: Update to 1.94.1

Too many changes since v1.26 to list here
Changes: https://yanglab.westlake.edu.cn/software/gcta/#Download

Reported by:    pkg-fallout
commit hash: 9d8c5cb3ebf27b3f044cc0755dcc71727e1261be commit hash: 9d8c5cb3ebf27b3f044cc0755dcc71727e1261be commit hash: 9d8c5cb3ebf27b3f044cc0755dcc71727e1261be commit hash: 9d8c5cb3ebf27b3f044cc0755dcc71727e1261be 9d8c5cb
Sunday, 23 Apr 2023
09:09 Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b 8d3e020
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 6 Jul 2022
20:40 Yuri Victorovich (yuri) search for other commits by this committer
biology/gcta: Use bundled version of eigen3

... in preparation to upgrading math/eigen to 3.4.0.

This version of gcta (1.26.0) doesn't support eigen-3.4.0, and
it can't be upgraded because latest versions of gcta use
Intel's closed source MKL library.

PR:		265032
Suggested by:	tcberner@
Approved by:	portmgr (interoperability)
commit hash: 5fa506511af383c8b1a2f49f861df31966d32493 commit hash: 5fa506511af383c8b1a2f49f861df31966d32493 commit hash: 5fa506511af383c8b1a2f49f861df31966d32493 commit hash: 5fa506511af383c8b1a2f49f861df31966d32493 5fa5065
Wednesday, 7 Apr 2021
08:09 Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c cf118cc
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Monday, 11 Jan 2021
17:09 jwb search for other commits by this committer
biology/gcta: Drop dependency on gcc

Replace compiler:openmp with compiler:c++11-lang
Clang build also requires localbase:ldflags
Build tested on amd64, i386 and powerpc64 12.x-RELEASE

PR:             port/247753, ports/252379
Original commitRevision:561231 
Saturday, 12 Dec 2020
17:04 thierry search for other commits by this committer
- Upgrade math/eigen3 to 3.3.8;

- Add some dependencies which might be detected by Find_Package but not
registered;

- Bump PORTREVISION of consumers.

PR:		250833
Submitted by:	/me
Approved by:	tcberner@ (KDE / maintainer) + exp-run
Original commitRevision:557839 
Sunday, 8 Nov 2020
14:31 jwb search for other commits by this committer
biology/gcta: Switch eigen3 dep to USES framework

PR:             ports/250949
Reported by:    lbartoletti
Original commitRevision:554467 
Wednesday, 6 May 2020
16:11 yuri search for other commits by this committer
Bump 46 ports depending on math/openblas because the after the recent
math/openblas update the library name changed in openblas.
Original commitRevision:534185 
Wednesday, 15 Apr 2020
15:22 jwb search for other commits by this committer
biology/gcta: Genome-wide Complex Trait Analysis

GCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate
the proportion of phenotypic variance explained by genome- or chromosome-wide
SNPs for complex traits (the GREML method), and has subsequently extended for
many other analyses to better understand the genetic architecture of complex
traits.
Original commitRevision:531770 

Number of commits found: 14