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non port: biology/gemma/Makefile
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Number of commits found: 14

Wed, 12 Jan 2022
[ 19:41 Tobias C. Berner (tcberner) search for other commits by this committer ]    commit hash:654acd81409d31495f8b1b11db61e1afbf640981  654acd8  (Only the first 10 of 66 ports in this commit are shown above. View all ports for this commit)
math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201
Wed, 16 Jun 2021
[ 19:31 Tobias C. Berner (tcberner) search for other commits by this committer ]    commit hash:63e653adaa7493aa98f17f9fbc834c0aed7e096e  63e653a  (Only the first 10 of 66 ports in this commit are shown above. View all ports for this commit)
math/gsl: update to 2.7

From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Wed, 7 Apr 2021
[ 08:09 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc  (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Sat, 2 Jan 2021
[ 22:05 jwb search for other commits by this committer ] Original commit   Revision:559975
biology/gemma: Upgrade to 0.98.3

Minor bug fixes and enhancements

Reported by:    portscout
Sat, 12 Dec 2020
[ 17:04 thierry search for other commits by this committer ] Original commit   Revision:557839 (Only the first 10 of 80 ports in this commit are shown above. View all ports for this commit)
- Upgrade math/eigen3 to 3.3.8;

- Add some dependencies which might be detected by Find_Package but not
registered;

- Bump PORTREVISION of consumers.

PR:		250833
Submitted by:	/me
Approved by:	tcberner@ (KDE / maintainer) + exp-run
Wed, 6 May 2020
[ 16:39 yuri search for other commits by this committer ] Original commit   Revision:534190 (Only the first 10 of 37 ports in this commit are shown above. View all ports for this commit)
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas
Thu, 30 Jan 2020
[ 14:17 swills search for other commits by this committer ] Original commit   Revision:524642 (Only the first 10 of 90 ports in this commit are shown above. View all ports for this commit)
Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix
Tue, 21 Jan 2020
[ 22:03 swills search for other commits by this committer ] Original commit   Revision:523749 (Only the first 10 of 32 ports in this commit are shown above. View all ports for this commit)
math/openblas: Update to 0.3.7

While here, improve formatting and fix build of dependant ports.

PR:		231371
Submitted by:	yuri (initial version), pkubaj (ppc fixes)
Approved by:	Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp> (maintainer)
Tue, 14 Jan 2020
[ 22:35 jwb search for other commits by this committer ] Original commit   Revision:523074
biology/gemma: Unbreak build

Conflict between cblas.h and gsl_cblas.h
Fri, 25 Oct 2019
[ 23:41 tcberner search for other commits by this committer ] Original commit   Revision:515671 (Only the first 10 of 64 ports in this commit are shown above. View all ports for this commit)
math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
Fri, 26 Jul 2019
[ 20:46 gerald search for other commits by this committer ] Original commit   Revision:507372 (Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Sat, 18 May 2019
[ 22:41 jwb search for other commits by this committer ] Original commit   Revision:501990
biology/gemma: Lowercase PORTNAME, remove unnecesary USE_GCC

Reported by:    danfe, Gerald Pfeifer
Fri, 17 May 2019
[ 14:45 jwb search for other commits by this committer ] Original commit   Revision:501873
biology/gemma: Genome-wide Efficient Mixed Model Association

GEMMA is a software toolkit for fast application of linear mixed models (LMMs)
and related models to genome-wide association studies (GWAS) and other
large-scale data sets.

Number of commits found: 14