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Two new features

Two new features were added on 2020-05-30:
  1. Repology links - each port now has a link to repology.org. See issue 148 for details.
  2. Ports I maintain report - port maintainers can now subscribe to a daily report of commits to the ports they maintain. See Watch ports I maintain at Report Subscriptions. Details at issue 138
non port: biology/gemma/Makefile
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Number of commits found XX: 8

Wed, 6 May 2020
[ 16:39 yuri ] Original commit   Revision:534190
534190 biology/gemma/Makefile
534190 biology/plink/Makefile
534190 databases/grass7/Makefile
534190 mail/rspamd-devel/Makefile
534190 mail/rspamd/Makefile
534190 math/R/Makefile
534190 math/adept/Makefile
534190 math/casadi/Makefile
534190 math/ceres-solver/Makefile
534190 math/cminpack/Makefile

(Only the first 10 of 37 ports in this commit are shown above. View all ports for this commit)
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas
Thu, 30 Jan 2020
[ 14:17 swills ] Original commit   Revision:524642
524642 biology/bolt-lmm/Makefile
524642 biology/gemma/Makefile
524642 biology/treekin/Makefile
524642 cad/calculix-ccx/Makefile
524642 cad/gmsh/Makefile
524642 cad/pdnmesh/Makefile
524642 databases/grass7/Makefile
524642 devel/ocaml-lacaml/Makefile
524642 games/leela-zero/Makefile
524642 graphics/caffe/Makefile

(Only the first 10 of 90 ports in this commit are shown above. View all ports for this commit)
Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix
Tue, 21 Jan 2020
[ 22:03 swills ] Original commit   Revision:523749
523749 Mk/Uses/blaslapack.mk
523749 biology/gemma/Makefile
523749 games/leela-zero/Makefile
523749 lang/julia06/Makefile
523749 lang/julia07/Makefile
523749 lang/julia10/Makefile
523749 lang/julia11/Makefile
523749 math/armadillo/Makefile
523749 math/hmat-oss/Makefile
523749 math/octave-forge-ltfat/Makefile

(Only the first 10 of 32 ports in this commit are shown above. View all ports for this commit)
math/openblas: Update to 0.3.7

While here, improve formatting and fix build of dependant ports.

PR:		231371
Submitted by:	yuri (initial version), pkubaj (ppc fixes)
Approved by:	Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp> (maintainer)
Tue, 14 Jan 2020
[ 22:35 jwb ] Original commit   Revision:523074
523074 biology/gemma/Makefile
523074 biology/gemma/files/Makefile
523074 biology/gemma/files/patch-src_fastopenblas.h
523074 biology/gemma/files/patch-src_gemma.cpp
biology/gemma: Unbreak build

Conflict between cblas.h and gsl_cblas.h
Fri, 25 Oct 2019
[ 23:41 tcberner ] Original commit   Revision:515671
515671 astro/gnuastro/Makefile
515671 astro/siril/Makefile
515671 audio/p5-Audio/Makefile
515671 audio/snd/Makefile
515671 benchmarks/flowgrind/Makefile
515671 biology/bcftools/Makefile
515671 biology/gemma/Makefile
515671 biology/viennarna/Makefile
515671 comms/gnuradio/Makefile
515671 editors/calligra/Makefile

(Only the first 10 of 64 ports in this commit are shown above. View all ports for this commit)
math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
Fri, 26 Jul 2019
[ 20:46 gerald ] Original commit   Revision:507372
507372 Mk/bsd.ruby.mk
507372 accessibility/atkmm/Makefile
507372 accessibility/kmag/Makefile
507372 accessibility/kmousetool/Makefile
507372 accessibility/kmouth/Makefile
507372 accessibility/libqaccessibilityclient/Makefile
507372 accessibility/qt5-speech/Makefile
507372 archivers/R-cran-zip/Makefile
507372 archivers/ark/Makefile
507372 archivers/brotli/Makefile

(Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Sat, 18 May 2019
[ 22:41 jwb ] Original commit   Revision:501990
501990 biology/gemma/Makefile
biology/gemma: Lowercase PORTNAME, remove unnecesary USE_GCC

Reported by:    danfe, Gerald Pfeifer
Fri, 17 May 2019
[ 14:45 jwb ] Original commit   Revision:501873
501873 biology/Makefile
501873 biology/gemma
501873 biology/gemma/Makefile
501873 biology/gemma/distinfo
501873 biology/gemma/files
501873 biology/gemma/files/Makefile
501873 biology/gemma/files/patch-doc_manual.tex
501873 biology/gemma/files/patch-src_gemma.cpp
501873 biology/gemma/pkg-descr
501873 biology/gemma/pkg-plist
biology/gemma: Genome-wide Efficient Mixed Model Association

GEMMA is a software toolkit for fast application of linear mixed models (LMMs)
and related models to genome-wide association studies (GWAS) and other
large-scale data sets.

Number of commits found XX: 8

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