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Port details
genpak Utilities to manipulate DNA sequences
0.26_9 biology Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.26_9Version of this port present on the latest quarterly branch.
Deprecated DEPRECATED: Unmaintained since 2001
Expired This port expired on: 2014-04-12
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2001-02-27 23:46:53
Last Update: 2014-04-13 10:55:38
SVN Revision: 351202
License: not specified in port
WWW:
http://www.bioinformatics.org/genpak/#gp
Description:
GP is a set of small utilities written in ANSI C to manipulate DNA sequences in a Unix fashion, fit for combining within shell and cgi scripts. The sequences are usually in fasta format, that means the first line is the sequence name starting with ">", and the sequence comes in the next lines. The programs accept also gzipped sequence files. WWW: http://www.bioinformatics.org/genpak/#gp
Homepage    cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
There is no configure plist information for this port.
Dependency lines:
  • genpak>0:biology/genpak
No installation instructions:
This port has been deleted.
PKGNAME: genpak
Flavors: there is no flavor information for this port.
distinfo:
There is no distinfo for this port.

No package information for this port in our database
Sometimes this happens. Not all ports have packages.
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake : devel/gmake
Library dependencies:
  1. libgd.so : graphics/gd
There are no ports dependent upon this port

Configuration Options:
===> The following configuration options are available for genpak-0.26_9: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings
Options name:
N/A
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (2 items)
Collapse this list.
  1. ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/distfiles/
  2. http://www.bioinformatics.org/genpak/download/
Collapse this list.

Number of commits found: 24

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
0.26_9
13 Apr 2014 10:55:38
Revision:351202Original commit files touched by this commit
rene search for other commits by this committer
Remove expired ports:
2014-04-12 net/pvm++: Unmaintained since 2001
2014-04-12 devel/ixlib: Unmaintained since 2001
2014-04-12 mail/althea: Unmaintained since 2001
2014-04-12 graphics/claraocr: Unmaintained since 2001
2014-04-12 graphics/qvplay: Unmaintained since 2001
2014-04-12 print/guitartex: Unmaintained since 2001
2014-04-12 print/pnm2ppa: Unmaintained since 2001
2014-04-12 graphics/opendis: Unmaintained since 2001
2014-04-12 net/gnome-mud: Unmaintained since 2001
2014-04-12 graphics/maverik: Unmaintained since 2001
2014-04-12 biology/rasmol: Unmaintained since 2001
2014-04-12 mail/mail2procmailrc: Unmaintained since 2001
2014-04-12 science/felt: Unmaintained since 2001
2014-04-12 textproc/pardiff: Unmaintained since 2001
(Only the first 15 lines of the commit message are shown above View all of this commit message)
0.26_9
08 Mar 2014 22:26:22
Revision:347539Original commit files touched by this commit
antoine search for other commits by this committer
Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained
since more than 12 years)
0.26_9
21 Feb 2014 13:35:26
Revision:345397Original commit files touched by this commit
ehaupt search for other commits by this committer
Remove trailing whitespaces from category biology
0.26_9
10 Feb 2014 13:54:28
Revision:343634Original commit files touched by this commit
ehaupt search for other commits by this committer
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
0.26_9
09 Dec 2013 01:28:41
Revision:335949Original commit files touched by this commit
adamw search for other commits by this committer
Respect PORT_OPTIONS:MDOCS
Clean up COMMENT
USES=gmake
0.26_9
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
09 Aug 2013 14:05:53
Revision:324437Original commit files touched by this commit Sanity Test Failure Refresh
dinoex search for other commits by this committer
- update libdg to 2.1.0
0.26_8
01 Jun 2012 05:26:28
Original commit files touched by this commit
dinoex search for other commits by this committer
- update png to 1.5.10
0.26_7
19 Mar 2011 12:38:54
Original commit files touched by this commit
miwi search for other commits by this committer
- Get Rid MD5 support
0.26_7
28 Mar 2010 06:47:48
Original commit files touched by this commit
dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
0.26_6
05 Feb 2010 11:46:55
Original commit files touched by this commit
dinoex search for other commits by this committer
- update to jpeg-8
0.26_5
31 Jul 2009 13:57:52
Original commit files touched by this commit
dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
0.26_4
25 Jul 2008 09:08:42
Original commit files touched by this commit
pav search for other commits by this committer
- Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default
MAKE_ENV
0.26_4
19 May 2007 20:32:57
Original commit files touched by this commit
flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
0.26_3
24 Nov 2005 00:04:00
Original commit files touched by this commit
pav search for other commits by this committer
- Add SHA256
0.26_3
04 Feb 2004 05:21:48
Original commit files touched by this commit
marcus search for other commits by this committer
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.

(Part 2)
0.26_2
27 Jan 2004 20:51:07
Original commit files touched by this commit
trevor search for other commits by this committer
Add SIZE.
0.26_2
18 Aug 2003 16:15:11
Original commit files touched by this commit
nork search for other commits by this committer
o Main modification
  graphics/gd(based on 1.8.4)    -> graphics/gd1
  graphics/gd2(based on 2.0.15)  -> graphics/gd
  graphics/p5-GD(based on 1.41)  -> graphics/p5-GD1
  graphics/p5-GD2(based on 2.07) -> graphics/p5-GD
  japanese/gd                    -> japanese/gd1
  japanese/gd2                   -> japanese/gd
o Include some feature
  WITH_XPM(w/, w/o WITHOUT_X11)
o Chase this modification
o Fix build error [1]

PR:             ports/54540
Submitted by:   Ports Fury
Approved by:    maintainer (blanket)
Reported by:    bento via kris [1]
0.26_1
11 Jul 2003 18:16:14
Original commit files touched by this commit
nork search for other commits by this committer
o Change library name from libgd to libgd1.
o Do not install everything except headers and libraries
  (to avoid conflicting with graphics/gd2)
o Fix dependency on new libgd1(for many ports).

PR:             ports/54100
Submitted by:   Ports Fury
0.26
20 Feb 2003 16:51:35
Original commit files touched by this commit
knu search for other commits by this committer
De-pkg-comment.
11 Sep 2001 04:09:30
commit hash: fp1.18597@dev.null.freshports.orgcommit hash: fp1.18597@dev.null.freshports.orgcommit hash: fp1.18597@dev.null.freshports.orgcommit hash: fp1.18597@dev.null.freshports.org files touched by this commit
ache search for other commits by this committer
Bump png major    
09 Aug 2001 18:37:03
commit hash: fp1.17025@dev.null.freshports.orgcommit hash: fp1.17025@dev.null.freshports.orgcommit hash: fp1.17025@dev.null.freshports.orgcommit hash: fp1.17025@dev.null.freshports.org files touched by this commit
ijliao search for other commits by this committer
upgrade to 0.26   drop maintainership    
05 Mar 2001 07:39:06
commit hash: fp1.10300@dev.null.freshports.orgcommit hash: fp1.10300@dev.null.freshports.orgcommit hash: fp1.10300@dev.null.freshports.orgcommit hash: fp1.10300@dev.null.freshports.org files touched by this commit
ijliao search for other commits by this committer
gd.2, not gd.1    
28 Feb 2001 02:46:53
commit hash: fp1.10111@dev.null.freshports.orgcommit hash: fp1.10111@dev.null.freshports.orgcommit hash: fp1.10111@dev.null.freshports.orgcommit hash: fp1.10111@dev.null.freshports.org files touched by this commit
ijliao search for other commits by this committer
reimport biology/genpak    

Number of commits found: 24