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non port: biology/gmap/Makefile
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Number of commits found: 24

Sun, 6 Feb 2022
[ 18:36 Stefan Eßer (se) search for other commits by this committer ]    commit hash:bdd2d4af9630fdc1157d49bd193e8195c3240e9e  bdd2d4a  (Only the first 10 of 69 ports in this commit are shown above. View all ports for this commit)
Update CONFLICTS definitions in categories a* to c*

Update the CONFLICTS definitions of ports in the following categories:

- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters

An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.

There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.

Approved by:	portmgr (implicit)
Mon, 10 Jan 2022
[ 15:15 Stefan Eßer (se) search for other commits by this committer ]    commit hash:bcaf25a8c8046b094f6b5ab5bc258333bc326ee1  bcaf25a  (Only the first 10 of 491 ports in this commit are shown above. View all ports for this commit)
Fix CONFLICTS entries of multiple ports

There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.

This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.

Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Mon, 25 Oct 2021
[ 12:58 Alexey Dokuchaev (danfe) search for other commits by this committer ]    commit hash:61b661339366b6ee95ca1de0667979da9240c6b8  61b6613  (Only the first 10 of 79 ports in this commit are shown above. View all ports for this commit)
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)

ONLY_FOR_ARCHS_REASON is used as part of the sentence and thus should
start with lower-case letter and not end with a period which is added
by the framework, similar to other knobs like BROKEN, IGNORE, et al.

While here, remove needless quoting, add missing Oxford comma, expand
contractions and jargonisms, use correct spelling for proper names.
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Fri, 9 Oct 2020
[ 13:23 pkubaj search for other commits by this committer ] Original commit   Revision:551768
biology/gmap: enable on powerpc64le

Doesn't build on powerpc64 due to missing big-endian code variants, but builds
on powerpc64le.
Tue, 22 Sep 2020
[ 00:55 jwb search for other commits by this committer ] Original commit   Revision:549546
biology/gmap: Upgrade to 2020.09.12

First upgrade in 5 years, so numerous improvements
Unsure if powerpc is still supported upstream
Code mentions power8, but does not build on my Mac G5
Fri, 21 Jun 2019
[ 11:15 linimon search for other commits by this committer ] Original commit   Revision:504785
Enable workaround for building on powerpc64.

Autoconf reports that HAVE_ASM_BSR is true (1).  However, it's a false
positive.

I do not have enough knowledge of autoconf to fix this problem correctly,
so fix src/config.h in post-configure.  Patches welcome.

A proper fix will most likely also fix the build on other tier-2 archs,
but I have not taken the time to test that yet.

Approved by:	portmgr (tier-2 blanket)
Wed, 31 Jan 2018
[ 01:07 jwb search for other commits by this committer ] Original commit   Revision:460452 (Only the first 10 of 56 ports in this commit are shown above. View all ports for this commit)
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
Thu, 21 Dec 2017
[ 10:23 linimon search for other commits by this committer ] Original commit   Revision:456901 (Only the first 10 of 13 ports in this commit are shown above. View all ports for this commit)
Try to bring some consistency to ports that have x86-specific pieces.

 - in general, if we think that the code is not architecture-specific,
   and instead just enables x86 assembler by default, those should
   use BROKEN rather than IGNORE.  This will allow them to be attempted
   with TRYBROKEN.
 - spell i386 as x86.
 - spell asm as assembler.
 - pet portlint.

These changes should have no effect on tier-1 builds.

Approved by:	portmgr (tier-2 blanket)
Thu, 30 Nov 2017
[ 06:13 linimon search for other commits by this committer ] Original commit   Revision:455167 (Only the first 10 of 189 ports in this commit are shown above. View all ports for this commit)
For ports that are marked BROKEN on armv6, and also fail to build on
armv7, mark them so.

This is part two of a multipart commit to bring armv7 ports to parity
with armv6.

Approved by:	portmgr (tier-2 blanket)
Obtained from:	lonesome.com -exp run
Sat, 13 May 2017
[ 03:35 linimon search for other commits by this committer ] Original commit   Revision:440746 (Only the first 10 of 34 ports in this commit are shown above. View all ports for this commit)
Mark some ports failing on power64.  In cases where the error message
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Sun, 26 Feb 2017
[ 12:56 linimon search for other commits by this committer ] Original commit   Revision:434867
Mark various ports as broken on armv6: invokes x86 asm.

Approved by:	portmgr (tier-2 blanket)
Tue, 8 Nov 2016
[ 19:29 linimon search for other commits by this committer ] Original commit   Revision:425758 (Only the first 10 of 45 ports in this commit are shown above. View all ports for this commit)
The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.
[ 03:40 linimon search for other commits by this committer ] Original commit   Revision:425675
Mark broken on all tier-2 archs.

Approved by:	portmgr (tier-2 blanket)
Sun, 13 Dec 2015
[ 16:07 swills search for other commits by this committer ] Original commit   Revision:403676 (Only the first 10 of 26 ports in this commit are shown above. View all ports for this commit)
mark some of the ports that don't build on powerpc64 for me
Fri, 11 Dec 2015
[ 08:48 miwi search for other commits by this committer ] Original commit   Revision:403506 (Only the first 10 of 54 ports in this commit are shown above. View all ports for this commit)
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
Tue, 27 Oct 2015
[ 18:49 madpilot search for other commits by this committer ] Original commit   Revision:400336
- Update to 2015.09.21
- Add License
- Add SIMD option disabled by default to avoid creating official
  packags with CPU specific optimizations
- Add pkg-message explaining how to get an optimized binary
- Assign maintainership to submitter

PR:		203334
Submitted by:	jwbacon at tds.net
Approved by:	Maintainer timeout
Fri, 5 Sep 2014
[ 09:25 antoine search for other commits by this committer ] Original commit   Revision:367328
Fix MASTER_SITES

Submitted by:	tijl@
Tue, 10 Dec 2013
[ 17:21 bapt search for other commits by this committer ] Original commit   Revision:336070
Support stage
Convert USE_GMAKE to USES=gmake
Add dependency on perl which the port need and was getting by chance
bump portrevision, dependencies has changed
Fri, 20 Sep 2013
[ 15:55 bapt search for other commits by this committer ] Original commit   Revision:327709 (Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Sun, 12 Dec 2010
[ 08:10 pgollucci search for other commits by this committer ] Original commit 
- fix fetch: wget is not required for fetching

Reported by:    QAT
Thu, 21 Aug 2008
[ 06:18 rafan search for other commits by this committer ] Original commit  (Only the first 10 of 1030 ports in this commit are shown above. View all ports for this commit)
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
Specifically, newer autoconf (> 2.13) has different semantic of the
configure target. In short, one should use --build=CONFIGURE_TARGET
instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning
and the old semantic may be removed in later autoconf releases.

To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.

To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.

Changes to Mk/*:
 - Add runtime detection magic in bsd.port.mk
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Mon, 16 Apr 2007
[ 21:18 edwin search for other commits by this committer ] Original commit 
[patch] cleanup non-supported FreeBSD versions

PR:             ports/111727
Submitted by:   Edwin Groothuis <edwin@mavetju.org>
Approved by:    Bob Zimmermann <rpz@cse.wustl.edu>
Fri, 29 Sep 2006
[ 04:05 clsung search for other commits by this committer ] Original commit 
Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA
and EST Sequences.

PR:             ports/103651
Submitted by:   Bob Zimmermann <rpz at cse.wustl.edu>

Number of commits found: 24