| Port details on branch 2022Q3 |
- grappa Genome Rearrangements Analysis and Phylogeny Software
- 2.0_1 biology
 =0      2.0_1Version of this port present on the latest quarterly branch.  DEPRECATED: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
 This port expired on: 2021-04-01
- There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2001-07-04 05:39:40
- Last Update: 2021-04-07 17:54:26
- Commit Hash: 5980fd4
- License: GPLv2
- WWW:
- http://www.cs.unm.edu/~moret/GRAPPA/
- Description:
- GRAPPA: Genome Rearrangements Analysis under Parsimony and other
Phylogenetic Algorithms
This suite of programs implements the approach to phylogeny
reconstruction from gene orders described in the paper
Moret, B.M.E., Wyman, S., Bader, D.A., Warnow, T., and Yan, M.,
``A detailed study of breakpoint analysis,''
Proc. 6th Pacific Symp. Biocomputing PSB 2001, Hawaii (2001).
In its current state, "grappa" allows one to explore either the
space of all possible trees on n labelled leaves or the space of all
such trees that obey (are refinements of) a particular constraint tree.
"invdist" takes the first two genomes in the input file and returns
their inversion distance.
"distmat" prints the inversion and breakpoint distance matrices.
WWW: http://www.cs.unm.edu/~moret/GRAPPA/
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- No installation instructions:
- This port has been deleted.
- PKGNAME: grappa
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (GRAPPA20.tar.gz) = 19b3c5ab21c845eaf4fcf56fcf09a15db84597d8438155bb463d8f3e1bb51103
SIZE (GRAPPA20.tar.gz) = 172261
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_grappa
- USES:
- gmake
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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