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SVNWeb
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Number of commits found XX: 12 |
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Thu, 5 Nov 2020
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[ 20:30 jwb ]  
554155 biology/htslib/Makefile
554155 biology/htslib/distinfo
554155 biology/htslib/files/patch-Makefile
554155 biology/htslib/files/patch-hfile__libcurl.c
554155 biology/htslib/files/patch-hts.c
554155 biology/htslib/files/patch-sam.c
554155 biology/htslib/pkg-plist
biology/htslib: Upgrade to 1.11.0
Numerous bug fixes, new features and performance improvements since 1.10
https://github.com/samtools/htslib/releases/tag/1.11
Reported by: portscout
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Mon, 3 Aug 2020
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[ 17:40 jwb ]
544090 biology/bcftools/Makefile
544090 biology/cufflinks/Makefile
544090 biology/htslib/Makefile
544090 biology/htslib/distinfo
544090 biology/htslib/files/patch-Makefile
544090 biology/htslib/files/patch-hfile__libcurl.c
544090 biology/htslib/pkg-plist
544090 biology/jellyfish/Makefile
544090 biology/pbbam/Makefile
544090 biology/samtools/Makefile
(Only the first 10 of 12 ports in this commit are shown above.  )
biology/htslib: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags
Bump PORTREVISION on dependents that don't require additional patching
PR: 248089
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Thu, 2 Aug 2018
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[ 19:27 fernape ]
476245 biology/htslib/Makefile
476245 biology/htslib/distinfo
biology/htslib: update to 1.9
PR: 230170
Submitted by: ndowens.fbsd@yandex.com
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D16568
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Mon, 16 Jul 2018
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[ 18:11 yuri ]
474752 biology/htslib/Makefile
474752 biology/htslib/distinfo
474752 biology/htslib/pkg-descr
474752 biology/htslib/pkg-plist
biology/htslib: Update 1.6 -> 1.8
Port changes:
* Use DISTVERSION
* Add USES=localbase instead of CPPFLAGS/LDFLAGS
* Move USES=ssl to CURL_USES=ssl
* Update WWW
PR: 228908
Approved by: maintainer's timeout (cartwright@asu.edu; 35 days)
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Wed, 25 Oct 2017
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[ 10:19 pizzamig ]
452840 biology/bcftools/Makefile
452840 biology/bcftools/distinfo
452840 biology/bcftools/files/patch-Makefile
452840 biology/bcftools/files/patch-configure.ac
452840 biology/bcftools/files/patch-misc_run-roh.pl
452840 biology/bcftools/files/patch-prob1.c
452840 biology/bcftools/files/patch-test_test.pl
452840 biology/bcftools/files/pkg-message.in
452840 biology/bcftools/pkg-plist
452840 biology/htslib/Makefile
(Only the first 10 of 25 ports in this commit are shown above. )
biology/htslib biology/bcftools biology/samtools: Update to 1.6
PR: 223094
Submitted by: mzaki@niid.go.jp
Approved by: cartwright@asu.edu (maintainer)
Approved by: olivier (mentor)
Differential Revision: https://reviews.freebsd.org/D12768
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Fri, 21 Oct 2016
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[ 15:21 mat ]
424427 archivers/lhasa/Makefile
424427 archivers/liblz4/Makefile
424427 archivers/minizip/Makefile
424427 archivers/unadf/Makefile
424427 audio/libaacplus/Makefile
424427 audio/libadplug/Makefile
424427 audio/libmikmod/Makefile
424427 audio/libmikmod/files
424427 audio/libtremor/Makefile
424427 audio/libxmp/Makefile
(Only the first 10 of 354 ports in this commit are shown above. )
Use USES=pathfix where applicable.
PR: 213195
Submitted by: mat
Exp-run by: antoine
Sponsored by: Absolight
Differential Revision: https://reviews.freebsd.org/D8093
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Thu, 26 May 2016
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[ 20:28 pi ]
415914 biology/bcftools/Makefile
415914 biology/bcftools/distinfo
415914 biology/bcftools/pkg-plist
415914 biology/htslib/Makefile
415914 biology/htslib/distinfo
415914 biology/samtools/Makefile
415914 biology/samtools/distinfo
415914 biology/samtools/files/patch-Makefile
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
Changes:
https://sourceforge.net/p/samtools/mailman/message/35033807/
PR: 209653
Submitted by: cartwright@asu.edu (maintainer)
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Fri, 1 Apr 2016
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[ 13:29 mat ]
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile
(Only the first 10 of 1009 ports in this commit are shown above. )
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight
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Fri, 25 Dec 2015
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[ 01:31 junovitch ]
404398 biology/bcftools/Makefile
404398 biology/bcftools/distinfo
404398 biology/bcftools/files/patch-Makefile
404398 biology/bcftools/files/patch-plugins_fixploidy.mk
404398 biology/bcftools/files/patch-plugins_vcf2sex.mk
404398 biology/bcftools/files/patch-prob1.c
404398 biology/bcftools/files/patch-test_test.pl
404398 biology/bcftools/files/pkg-message.in
404398 biology/bcftools/pkg-plist
404398 biology/htslib/Makefile
(Only the first 10 of 27 ports in this commit are shown above. )
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's
PR: 205524
PR: 205525
PR: 205526
Submitted by: cartwright@asu.edu (maintainer)
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Wed, 6 May 2015
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[ 15:16 mat ]
385521 benchmarks/flowgrind/Makefile
385521 benchmarks/flowgrind/distinfo
385521 biology/htslib/Makefile
385521 biology/htslib/distinfo
385521 biology/samtools/Makefile
385521 biology/samtools/distinfo
385521 cad/cura-engine/Makefile
385521 cad/cura-engine/distinfo
385521 cad/elmerfem/Makefile
385521 cad/elmerfem/distinfo
(Only the first 10 of 348 ports in this commit are shown above. )
Update ports in the [bcd]* categories to not use GH_COMMIT.
With minor cleanups to make things simpler.
With hat: portmgr
Sponsored by: Absolight
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Fri, 6 Mar 2015
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[ 12:45 robak ]
380596 biology/htslib/Makefile
380596 biology/htslib/distinfo
380596 biology/htslib/files/patch-Makefile
380596 biology/htslib/files/patch-configure.ac
380596 biology/htslib/files/patch-cram_cram__io.c
380596 biology/htslib/pkg-plist
biology/htslib: update 1.1 -> 1.2.1
PR: 198291
Submitted by: Reed Cartwright <cartwright@asu.edu>
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Sun, 14 Dec 2014
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[ 22:35 pawel ]
374729 biology/Makefile
374729 biology/htslib
374729 biology/htslib/Makefile
374729 biology/htslib/distinfo
374729 biology/htslib/files
374729 biology/htslib/files/patch-Makefile
374729 biology/htslib/pkg-descr
374729 biology/htslib/pkg-plist
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.
WWW: http://www.htslib.org/
PR: 195591
Submitted by: Reed A. Cartwright <cartwright@asu.edu>
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Number of commits found XX: 12 |
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