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Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: biology/htslib/distinfo
SVNWeb

Number of commits found XX: 8

Thu, 2 Aug 2018
[ 19:27 fernape ] Original commit   Revision:476245
476245 biology/htslib/Makefile
476245 biology/htslib/distinfo
biology/htslib: update to 1.9

PR:	230170
Submitted by:	ndowens.fbsd@yandex.com
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D16568
Mon, 16 Jul 2018
[ 18:11 yuri ] Original commit   Revision:474752
474752 biology/htslib/Makefile
474752 biology/htslib/distinfo
474752 biology/htslib/pkg-descr
474752 biology/htslib/pkg-plist
biology/htslib: Update 1.6 -> 1.8

Port changes:
* Use DISTVERSION
* Add USES=localbase instead of CPPFLAGS/LDFLAGS
* Move USES=ssl to CURL_USES=ssl
* Update WWW

PR:		228908
Approved by:	maintainer's timeout (cartwright@asu.edu; 35 days)
Wed, 25 Oct 2017
[ 10:19 pizzamig ] Original commit   Revision:452840
452840 biology/bcftools/Makefile
452840 biology/bcftools/distinfo
452840 biology/bcftools/files/patch-Makefile
452840 biology/bcftools/files/patch-configure.ac
452840 biology/bcftools/files/patch-misc_run-roh.pl
452840 biology/bcftools/files/patch-prob1.c
452840 biology/bcftools/files/patch-test_test.pl
452840 biology/bcftools/files/pkg-message.in
452840 biology/bcftools/pkg-plist
452840 biology/htslib/Makefile

(Only the first 10 of 25 ports in this commit are shown above. View all ports for this commit)
biology/htslib biology/bcftools biology/samtools: Update to 1.6

PR:		223094
Submitted by:	mzaki@niid.go.jp
Approved by:	cartwright@asu.edu (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12768
Thu, 26 May 2016
[ 20:28 pi ] Original commit   Revision:415914
415914 biology/bcftools/Makefile
415914 biology/bcftools/distinfo
415914 biology/bcftools/pkg-plist
415914 biology/htslib/Makefile
415914 biology/htslib/distinfo
415914 biology/samtools/Makefile
415914 biology/samtools/distinfo
415914 biology/samtools/files/patch-Makefile
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1

Changes:
  https://sourceforge.net/p/samtools/mailman/message/35033807/

PR:		209653
Submitted by:	cartwright@asu.edu (maintainer)
Fri, 25 Dec 2015
[ 01:31 junovitch ] Original commit   Revision:404398
404398 biology/bcftools/Makefile
404398 biology/bcftools/distinfo
404398 biology/bcftools/files/patch-Makefile
404398 biology/bcftools/files/patch-plugins_fixploidy.mk
404398 biology/bcftools/files/patch-plugins_vcf2sex.mk
404398 biology/bcftools/files/patch-prob1.c
404398 biology/bcftools/files/patch-test_test.pl
404398 biology/bcftools/files/pkg-message.in
404398 biology/bcftools/pkg-plist
404398 biology/htslib/Makefile

(Only the first 10 of 27 ports in this commit are shown above. View all ports for this commit)
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3

- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
Wed, 6 May 2015
[ 15:16 mat ] Original commit   Revision:385521
385521 benchmarks/flowgrind/Makefile
385521 benchmarks/flowgrind/distinfo
385521 biology/htslib/Makefile
385521 biology/htslib/distinfo
385521 biology/samtools/Makefile
385521 biology/samtools/distinfo
385521 cad/cura-engine/Makefile
385521 cad/cura-engine/distinfo
385521 cad/elmerfem/Makefile
385521 cad/elmerfem/distinfo

(Only the first 10 of 348 ports in this commit are shown above. View all ports for this commit)
Update ports in the [bcd]* categories to not use GH_COMMIT.

With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
Fri, 6 Mar 2015
[ 12:45 robak ] Original commit   Revision:380596
380596 biology/htslib/Makefile
380596 biology/htslib/distinfo
380596 biology/htslib/files/patch-Makefile
380596 biology/htslib/files/patch-configure.ac
380596 biology/htslib/files/patch-cram_cram__io.c
380596 biology/htslib/pkg-plist
biology/htslib: update 1.1 -> 1.2.1

PR:		198291
Submitted by:	Reed Cartwright <cartwright@asu.edu>
Sun, 14 Dec 2014
[ 22:35 pawel ] Original commit   Revision:374729
374729 biology/Makefile
374729 biology/htslib
374729 biology/htslib/Makefile
374729 biology/htslib/distinfo
374729 biology/htslib/files
374729 biology/htslib/files/patch-Makefile
374729 biology/htslib/pkg-descr
374729 biology/htslib/pkg-plist
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.

WWW: http://www.htslib.org/

PR:		195591
Submitted by:	Reed A. Cartwright <cartwright@asu.edu>

Number of commits found XX: 8

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