| non port: biology/htslib/pkg-plist |
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SVNWeb
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Number of commits found: 8 |
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Sat, 20 Mar 2021
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[ 17:14 jwb  ]   (Only the first 10 of 17 ports in this commit are shown above.  )
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12
Numerous enhancements, performance improvements, and bug fixes since 1.11
Build-tested all other htslib dependents, no revbumps should be needed
Reported by: portscout
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Thu, 5 Nov 2020
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[ 20:30 jwb ]
biology/htslib: Upgrade to 1.11.0
Numerous bug fixes, new features and performance improvements since 1.10
https://github.com/samtools/htslib/releases/tag/1.11
Reported by: portscout
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Mon, 3 Aug 2020
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[ 17:40 jwb ] (Only the first 10 of 12 ports in this commit are shown above. )
biology/htslib: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags
Bump PORTREVISION on dependents that don't require additional patching
PR: 248089
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Mon, 16 Jul 2018
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[ 18:11 yuri ]
biology/htslib: Update 1.6 -> 1.8
Port changes:
* Use DISTVERSION
* Add USES=localbase instead of CPPFLAGS/LDFLAGS
* Move USES=ssl to CURL_USES=ssl
* Update WWW
PR: 228908
Approved by: maintainer's timeout (cartwright@asu.edu; 35 days)
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Wed, 25 Oct 2017
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[ 10:19 pizzamig ] (Only the first 10 of 25 ports in this commit are shown above. )
biology/htslib biology/bcftools biology/samtools: Update to 1.6
PR: 223094
Submitted by: mzaki@niid.go.jp
Approved by: cartwright@asu.edu (maintainer)
Approved by: olivier (mentor)
Differential Revision: https://reviews.freebsd.org/D12768
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Fri, 25 Dec 2015
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[ 01:31 junovitch ] (Only the first 10 of 27 ports in this commit are shown above. )
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's
PR: 205524
PR: 205525
PR: 205526
Submitted by: cartwright@asu.edu (maintainer)
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Fri, 6 Mar 2015
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[ 12:45 robak ]
biology/htslib: update 1.1 -> 1.2.1
PR: 198291
Submitted by: Reed Cartwright <cartwright@asu.edu>
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Sun, 14 Dec 2014
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[ 22:35 pawel ]
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.
WWW: http://www.htslib.org/
PR: 195591
Submitted by: Reed A. Cartwright <cartwright@asu.edu>
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Number of commits found: 8 |
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