| Port details on branch 2022Q3 |
- iqtree Efficient phylogenomic software by maximum likelihood
- 2.3.2 biology
 =0      2.2.2.7Version of this port present on the latest quarterly branch. - Maintainer: jrm@FreeBSD.org
- Port Added: 2017-10-21 16:58:02
- Last Update: 2024-04-14 19:38:43
- Commit Hash: 1d8536b
- License: GPLv2
- WWW:
- http://www.iqtree.org/
- Description:
- IQ-TREE is efficient and versatile phylogenomic software, created as the
successor of IQPNNI and TREE-PUZZLE (thus the name IQ-TREE). Development was
motivated by the rapid accumulation of phylogenomic data, leading to a need for
efficient phylogenomic software that can handle a large amount of data and
provide more complex models of sequence evolution. To this end, IQ-TREE can
utilize multicore computers and distributed parallel computing to speed up the
analysis. IQ-TREE automatically performs checkpointing to resume an interrupted
analysis.
As input IQ-TREE accepts all common sequence alignment formats including PHYLIP,
FASTA, Nexus, Clustal and MSF. As output IQ-TREE will write a self-readable
report file (name suffix .iqtree), a NEWICK tree file (.treefile) which can be
visualized by tree viewer programs such as FigTree, Dendroscope or iTOL.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/iqtree/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/iqtree
- pkg install iqtree
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: iqtree
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1713099860
SHA256 (iqtree-iqtree2-v2.3.2_GH0.tar.gz) = c1f97b5fba459561739f4213e7014f29049e070f0cbe2a20473279b372e3c12e
SIZE (iqtree-iqtree2-v2.3.2_GH0.tar.gz) = 6161544
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- cmake : devel/cmake-core
- ninja : devel/ninja
- eigen3.pc : math/eigen3
- Library dependencies:
-
- libboost_filesystem.so : devel/boost-libs
- There are no ports dependent upon this port
Configuration Options:- ===> The following configuration options are available for iqtree-2.3.2:
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
- Options name:
- biology_iqtree
- USES:
- cmake eigen:3
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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