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Current status

The server has been repaired, with a new power supply, for $23. I am waiting for lower COVID rates before visiting the datacenter to return it.
non port: biology/iqtree/Makefile
SVNWeb

Number of commits found: 34

Wed, 7 Apr 2021
[ 08:09 mat (Mathieu Arnold) ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 mat (Mathieu Arnold) ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148 (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Tue, 12 Jan 2021
[ 18:12 jrm ] Original commit   Revision:561368
biology/iqtree: Remove USES=compiler:openmp, fix amd64 clang++ build

- USES=compiler:openmp still forces building with GCC.  This is no longer
  necessary on tier 1 platforms, which have openmp in base.

- Mark broken on i386, because base clang doesn't have 64 bit atomic
  functions for i386 (see bug 230888).

PR:		247753, 252379
Submitted by:	cmt (based on)
Sat, 12 Dec 2020
[ 17:04 thierry ] Original commit   Revision:557839(Only the first 10 of 80 ports in this commit are shown above. View all ports for this commit)
- Upgrade math/eigen3 to 3.3.8;

- Add some dependencies which might be detected by Find_Package but not
registered;

- Bump PORTREVISION of consumers.

PR:		250833
Submitted by:	/me
Approved by:	tcberner@ (KDE / maintainer) + exp-run
Sat, 30 May 2020
[ 18:43 jrm ] Original commit   Revision:537101
biology/iqtree: Update to version 2.0.6

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v2.0.6
Thu, 28 May 2020
[ 00:27 jrm ] Original commit   Revision:536729
biology/iqtree: Update to version 2.0.5

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v2.0.5

While here, incorporate portfmt suggestions.
Sat, 2 May 2020
[ 20:32 jrm ] Original commit   Revision:533706
biology/iqtree: Update to version 2.0.4
Tue, 27 Aug 2019
[ 01:19 jrm ] Original commit   Revision:509979
biology/iqtree: Update to version 1.6.12

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.12
Fri, 26 Jul 2019
[ 20:46 gerald ] Original commit   Revision:507372(Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Mon, 24 Jun 2019
[ 21:47 jrm ] Original commit   Revision:505061
biology/iqtree: Update to version 1.6.11

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.11
Thu, 21 Feb 2019
[ 14:33 jrm ] Original commit   Revision:493504
biology/iqtree: Update to version 1.6.10

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.10
Thu, 27 Dec 2018
[ 18:34 jrm ] Original commit   Revision:488558
biology/iqtree: switch to outsource cmake build
Wed, 26 Dec 2018
[ 09:06 tcberner ] Original commit   Revision:488363(Only the first 10 of 48 ports in this commit are shown above. View all ports for this commit)
Update math/eigen3 to 3.3.7

- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7
Tue, 25 Dec 2018
[ 20:25 tcberner ] Original commit   Revision:488341(Only the first 10 of 1277 ports in this commit are shown above. View all ports for this commit)
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
Sun, 23 Dec 2018
[ 13:21 jrm ] Original commit   Revision:488217
biology/iqtree: Update to version 1.6.9

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.9
Wed, 12 Dec 2018
[ 01:35 gerald ] Original commit   Revision:487272(Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Sun, 28 Oct 2018
[ 22:00 jrm ] Original commit   Revision:483358
biology/iqtree: Update to version 1.6.8

Upstream release notes:
https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.8
Tue, 16 Oct 2018
[ 13:49 jrm ] Original commit   Revision:482228
biology/iqtree: Update to version 1.6.7.1

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.7.1
Mon, 27 Aug 2018
[ 01:20 jrm ] Original commit   Revision:478170
biology/iqtree: Update to version 1.6.7

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.7
Sun, 29 Jul 2018
[ 22:18 gerald ] Original commit   Revision:475857(Only the first 10 of 1480 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
Sun, 8 Jul 2018
[ 21:15 jrm ] Original commit   Revision:474201
biology/iqtree: Update to version 1.6.6

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.6
Mon, 18 Jun 2018
[ 01:48 linimon ] Original commit   Revision:472665(Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
Mark ports broken on powerpc64, categories a-c.

While here, pet portlint and do some other cleanup.

Approved by:	portmgr (tier-2 blanket)
Fri, 11 May 2018
[ 16:57 jrm ] Original commit   Revision:469673
biology/iqtree: Update to version 1.6.5

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.5
Mon, 30 Apr 2018
[ 16:37 jrm ] Original commit   Revision:468714
biology/iqtree: Update to version 1.6.4

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.4
Fri, 23 Mar 2018
[ 01:22 jrm ] Original commit   Revision:465330
biology/iqtree: Update to version 1.6.3

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.3
Sat, 10 Mar 2018
[ 17:46 gerald ] Original commit   Revision:464084(Only the first 10 of 1104 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Sat, 3 Mar 2018
[ 03:15 jrm ] Original commit   Revision:463462
biology/iqtree: Update to version 1.6.2

Upstream changes: http://www.iqtree.org/release/v1.6.2
Tue, 2 Jan 2018
[ 16:49 tcberner ] Original commit   Revision:457914(Only the first 10 of 26 ports in this commit are shown above. View all ports for this commit)
New USES=eigen

  Usage:
    USES=eigen:<version>[,<type>]

    version: 2 or 3 (required)
    type:    build (default), run

  For example:
    USES=eigen:2,build,run
  will add a BUILD- and RUN_DEPENDS on math/eigen2, and
    USES=eigen:3
  will add a BUILD_DEPENDS on math/eigen3.

* Convert the existing ports to use it
  - biology/iqtree: remove run time dependency (seemed not to be needed)
  - graphics/movit: remove run time dependency (seemed not to be needed)
  - science/avogadro: add run time dependeny (installed cmake file requires it
to be present)

Reviewed by:	rakuco, mat
Differential Revision:	https://reviews.freebsd.org/D13702
Fri, 29 Dec 2017
[ 17:14 jrm ] Original commit   Revision:457516
biology/iqtree: Fix distinfo after upstream re-released v1.6.1
Thu, 28 Dec 2017
[ 18:37 jrm ] Original commit   Revision:457467
biology/iqtree: Update to version 1.6.1

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases
Mon, 11 Dec 2017
[ 07:18 linimon ] Original commit   Revision:455927
Mark several ports newly broken on arm.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Mon, 6 Nov 2017
[ 14:24 mat ] Original commit   Revision:453620
Fix USE_GITHUB usage.

Sponsored by:	Absolight
Sat, 21 Oct 2017
[ 17:40 jrm ] Original commit   Revision:452596
biology/iqtree: Add EXAMPLES option and fix mess with installation of
example files in first commit
[ 16:57 jrm ] Original commit   Revision:452595
New port, biology/iqtree: Efficient phylogenomic software

WWW: http://www.iqtree.org/

Number of commits found: 34