non port: biology/iqtree/Makefile |
SVNWeb
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Number of commits found: 37 |
Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Fri, 12 Aug 2022
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[ 14:46 Dima Panov (fluffy) ] 4cf39de (Only the first 10 of 722 ports in this commit are shown above. )
*/*: bump all consumers after recent boost upgrade
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Sun, 22 May 2022
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[ 20:17 Dima Panov (fluffy) ] b082b3d (Only the first 10 of 280 ports in this commit are shown above. )
devel/boost-all: bump all library consumers after boost upgrade
PR: 246106
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Wed, 7 Apr 2021
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[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Tue, 12 Jan 2021
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[ 18:12 jrm ]
biology/iqtree: Remove USES=compiler:openmp, fix amd64 clang++ build
- USES=compiler:openmp still forces building with GCC. This is no longer
necessary on tier 1 platforms, which have openmp in base.
- Mark broken on i386, because base clang doesn't have 64 bit atomic
functions for i386 (see bug 230888).
PR: 247753, 252379
Submitted by: cmt (based on)
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Sat, 12 Dec 2020
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[ 17:04 thierry ] (Only the first 10 of 80 ports in this commit are shown above. )
- Upgrade math/eigen3 to 3.3.8;
- Add some dependencies which might be detected by Find_Package but not
registered;
- Bump PORTREVISION of consumers.
PR: 250833
Submitted by: /me
Approved by: tcberner@ (KDE / maintainer) + exp-run
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Sat, 30 May 2020
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[ 18:43 jrm ]
biology/iqtree: Update to version 2.0.6
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v2.0.6
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Thu, 28 May 2020
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[ 00:27 jrm ]
biology/iqtree: Update to version 2.0.5
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v2.0.5
While here, incorporate portfmt suggestions.
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Sat, 2 May 2020
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[ 20:32 jrm ]
biology/iqtree: Update to version 2.0.4
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Tue, 27 Aug 2019
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[ 01:19 jrm ]
biology/iqtree: Update to version 1.6.12
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.12
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Fri, 26 Jul 2019
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[ 20:46 gerald ] (Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
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Mon, 24 Jun 2019
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[ 21:47 jrm ]
biology/iqtree: Update to version 1.6.11
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.11
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Thu, 21 Feb 2019
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[ 14:33 jrm ]
biology/iqtree: Update to version 1.6.10
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.10
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Thu, 27 Dec 2018
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[ 18:34 jrm ]
biology/iqtree: switch to outsource cmake build
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Wed, 26 Dec 2018
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[ 09:06 tcberner ] (Only the first 10 of 48 ports in this commit are shown above. )
Update math/eigen3 to 3.3.7
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7
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Tue, 25 Dec 2018
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[ 20:25 tcberner ] (Only the first 10 of 1277 ports in this commit are shown above. )
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine
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Sun, 23 Dec 2018
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[ 13:21 jrm ]
biology/iqtree: Update to version 1.6.9
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.9
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Wed, 12 Dec 2018
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[ 01:35 gerald ] (Only the first 10 of 3168 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
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Sun, 28 Oct 2018
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[ 22:00 jrm ]
biology/iqtree: Update to version 1.6.8
Upstream release notes:
https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.8
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Tue, 16 Oct 2018
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[ 13:49 jrm ]
biology/iqtree: Update to version 1.6.7.1
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.7.1
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Mon, 27 Aug 2018
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[ 01:20 jrm ]
biology/iqtree: Update to version 1.6.7
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.7
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Sun, 29 Jul 2018
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[ 22:18 gerald ] (Only the first 10 of 1480 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542
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Sun, 8 Jul 2018
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[ 21:15 jrm ]
biology/iqtree: Update to version 1.6.6
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.6
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Mon, 18 Jun 2018
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[ 01:48 linimon ] (Only the first 10 of 11 ports in this commit are shown above. )
Mark ports broken on powerpc64, categories a-c.
While here, pet portlint and do some other cleanup.
Approved by: portmgr (tier-2 blanket)
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Fri, 11 May 2018
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[ 16:57 jrm ]
biology/iqtree: Update to version 1.6.5
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.5
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Mon, 30 Apr 2018
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[ 16:37 jrm ]
biology/iqtree: Update to version 1.6.4
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.4
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Fri, 23 Mar 2018
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[ 01:22 jrm ]
biology/iqtree: Update to version 1.6.3
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.3
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Sat, 10 Mar 2018
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[ 17:46 gerald ] (Only the first 10 of 1104 ports in this commit are shown above. )
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
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Sat, 3 Mar 2018
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[ 03:15 jrm ]
biology/iqtree: Update to version 1.6.2
Upstream changes: http://www.iqtree.org/release/v1.6.2
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Tue, 2 Jan 2018
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[ 16:49 tcberner ] (Only the first 10 of 26 ports in this commit are shown above. )
New USES=eigen
Usage:
USES=eigen:<version>[,<type>]
version: 2 or 3 (required)
type: build (default), run
For example:
USES=eigen:2,build,run
will add a BUILD- and RUN_DEPENDS on math/eigen2, and
USES=eigen:3
will add a BUILD_DEPENDS on math/eigen3.
* Convert the existing ports to use it
- biology/iqtree: remove run time dependency (seemed not to be needed)
- graphics/movit: remove run time dependency (seemed not to be needed)
- science/avogadro: add run time dependeny (installed cmake file requires it
to be present)
Reviewed by: rakuco, mat
Differential Revision: https://reviews.freebsd.org/D13702
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Fri, 29 Dec 2017
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[ 17:14 jrm ]
biology/iqtree: Fix distinfo after upstream re-released v1.6.1
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Thu, 28 Dec 2017
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[ 18:37 jrm ]
biology/iqtree: Update to version 1.6.1
Upstream changes: https://github.com/Cibiv/IQ-TREE/releases
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Mon, 11 Dec 2017
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[ 07:18 linimon ]
Mark several ports newly broken on arm.
While here, pet portlint.
Approved by: portmgr (tier-2 blanket)
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Mon, 6 Nov 2017
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[ 14:24 mat ]
Fix USE_GITHUB usage.
Sponsored by: Absolight
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Sat, 21 Oct 2017
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[ 17:40 jrm ]
biology/iqtree: Add EXAMPLES option and fix mess with installation of
example files in first commit
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[ 16:57 jrm ]
New port, biology/iqtree: Efficient phylogenomic software
WWW: http://www.iqtree.org/
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Number of commits found: 37 |