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non port: biology/iqtree/Makefile
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Number of commits found: 24

Thu, 21 Feb 2019
[ 14:33 jrm ] Original commit   Revision:493504
493504 biology/iqtree/Makefile
493504 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.10

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.10
Thu, 27 Dec 2018
[ 18:34 jrm ] Original commit   Revision:488558
488558 biology/iqtree/Makefile
biology/iqtree: switch to outsource cmake build
Wed, 26 Dec 2018
[ 09:06 tcberner ] Original commit   Revision:488363
488363 astro/kstars-kde4/Makefile
488363 astro/kstars/Makefile
488363 audio/csound/Makefile
488363 audio/guitarix-lv2/Makefile
488363 biology/iqtree/Makefile
488363 cad/freecad/Makefile
488363 cad/openscad-devel/Makefile
488363 cad/openscad/Makefile
488363 editors/calligra/Makefile
488363 games/xptools/Makefile

(Only the first 10 of 48 ports in this commit are shown above. View all ports for this commit)
Update math/eigen3 to 3.3.7

- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7
Tue, 25 Dec 2018
[ 20:25 tcberner ] Original commit   Revision:488341
488341 CHANGES
488341 Mk/Uses/cmake.mk
488341 accessibility/jovie-kde4/Makefile
488341 accessibility/kaccessible-kde4/Makefile
488341 accessibility/kmag-kde4/Makefile
488341 accessibility/kmag/Makefile
488341 accessibility/kmousetool-kde4/Makefile
488341 accessibility/kmousetool/Makefile
488341 accessibility/kmouth-kde4/Makefile
488341 accessibility/kmouth/Makefile

(Only the first 10 of 1277 ports in this commit are shown above. View all ports for this commit)
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
Sun, 23 Dec 2018
[ 13:21 jrm ] Original commit   Revision:488217
488217 biology/iqtree/Makefile
488217 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.9

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.9
Wed, 12 Dec 2018
[ 01:35 gerald ] Original commit   Revision:487272
487272 Mk/bsd.ruby.mk
487272 accessibility/atkmm/Makefile
487272 accessibility/kmag/Makefile
487272 accessibility/kmousetool/Makefile
487272 accessibility/kmouth/Makefile
487272 accessibility/qt5-speech/Makefile
487272 archivers/R-cran-zip/Makefile
487272 archivers/ark/Makefile
487272 archivers/brotli/Makefile
487272 archivers/c-blosc/Makefile

(Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Sun, 28 Oct 2018
[ 22:00 jrm ] Original commit   Revision:483358
483358 biology/iqtree/Makefile
483358 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.8

Upstream release notes:
https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.8
Tue, 16 Oct 2018
[ 13:49 jrm ] Original commit   Revision:482228
482228 biology/iqtree/Makefile
482228 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.7.1

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.7.1
Mon, 27 Aug 2018
[ 01:20 jrm ] Original commit   Revision:478170
478170 biology/iqtree/Makefile
478170 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.7

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.7
Sun, 29 Jul 2018
[ 22:18 gerald ] Original commit   Revision:475857
475857 Mk/bsd.ruby.mk
475857 accessibility/atkmm/Makefile
475857 archivers/brotli/Makefile
475857 archivers/c-blosc/Makefile
475857 archivers/innoextract/Makefile
475857 archivers/kf5-karchive/Makefile
475857 archivers/lazperf/Makefile
475857 archivers/libpar2/Makefile
475857 archivers/paq/Makefile
475857 archivers/pxz/Makefile

(Only the first 10 of 1480 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
Sun, 8 Jul 2018
[ 21:15 jrm ] Original commit   Revision:474201
474201 biology/iqtree/Makefile
474201 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.6

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.6
Mon, 18 Jun 2018
[ 01:48 linimon ] Original commit   Revision:472665
472665 audio/faac/Makefile
472665 audio/faad/Makefile
472665 audio/mp3blaster/Makefile
472665 audio/volumeicon/Makefile
472665 biology/iqtree/Makefile
472665 cad/alliance/Makefile
472665 cad/freehdl/Makefile
472665 cad/meshlab/Makefile
472665 cad/repsnapper/Makefile
472665 chinese/ibus-libpinyin/Makefile

(Only the first 10 of 11 ports in this commit are shown above. View all ports for this commit)
Mark ports broken on powerpc64, categories a-c.

While here, pet portlint and do some other cleanup.

Approved by:	portmgr (tier-2 blanket)
Fri, 11 May 2018
[ 16:57 jrm ] Original commit   Revision:469673
469673 biology/iqtree/Makefile
469673 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.5

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.5
Mon, 30 Apr 2018
[ 16:37 jrm ] Original commit   Revision:468714
468714 biology/iqtree/Makefile
468714 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.4

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.4
Fri, 23 Mar 2018
[ 01:22 jrm ] Original commit   Revision:465330
465330 biology/iqtree/Makefile
465330 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.3

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases/tag/v1.6.3
Sat, 10 Mar 2018
[ 17:46 gerald ] Original commit   Revision:464084
464084 archivers/pxz/Makefile
464084 archivers/zip-ada/Makefile
464084 astro/R-cran-maptools/Makefile
464084 astro/astrometry/Makefile
464084 astro/kstars-kde4/Makefile
464084 astro/nightfall/Makefile
464084 astro/py-RO/Makefile
464084 astro/py-aipy/Makefile
464084 astro/py-astLib/Makefile
464084 astro/py-astropy/Makefile

(Only the first 10 of 1104 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Sat, 3 Mar 2018
[ 03:15 jrm ] Original commit   Revision:463462
463462 biology/iqtree/Makefile
463462 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.2

Upstream changes: http://www.iqtree.org/release/v1.6.2
Tue, 2 Jan 2018
[ 16:49 tcberner ] Original commit   Revision:457914
457914 CHANGES
457914 Mk/Uses/eigen.mk
457914 astro/kstars/Makefile
457914 audio/csound6/Makefile
457914 biology/iqtree/Makefile
457914 cad/freecad/Makefile
457914 cad/openscad/Makefile
457914 deskutils/kdeplasma-addons/Makefile
457914 editors/calligra/Makefile
457914 games/xptools/Makefile

(Only the first 10 of 26 ports in this commit are shown above. View all ports for this commit)
New USES=eigen

  Usage:
    USES=eigen:<version>[,<type>]

    version: 2 or 3 (required)
    type:    build (default), run

  For example:
    USES=eigen:2,build,run
  will add a BUILD- and RUN_DEPENDS on math/eigen2, and
    USES=eigen:3
  will add a BUILD_DEPENDS on math/eigen3.

* Convert the existing ports to use it
  - biology/iqtree: remove run time dependency (seemed not to be needed)
  - graphics/movit: remove run time dependency (seemed not to be needed)
  - science/avogadro: add run time dependeny (installed cmake file requires it
to be present)

Reviewed by:	rakuco, mat
Differential Revision:	https://reviews.freebsd.org/D13702
Fri, 29 Dec 2017
[ 17:14 jrm ] Original commit   Revision:457516
457516 biology/iqtree/Makefile
457516 biology/iqtree/distinfo
biology/iqtree: Fix distinfo after upstream re-released v1.6.1
Thu, 28 Dec 2017
[ 18:37 jrm ] Original commit   Revision:457467
457467 biology/iqtree/Makefile
457467 biology/iqtree/distinfo
biology/iqtree: Update to version 1.6.1

Upstream changes: https://github.com/Cibiv/IQ-TREE/releases
Mon, 11 Dec 2017
[ 07:18 linimon ] Original commit   Revision:455927
455927 biology/iqtree/Makefile
455927 biology/seqan-apps/Makefile
455927 devel/rcs57/Makefile
455927 sysutils/p5-File-Stat-Bits/Makefile
455927 www/h2o/Makefile
455927 www/mod_security-devel/Makefile
Mark several ports newly broken on arm.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Mon, 6 Nov 2017
[ 14:24 mat ] Original commit   Revision:453620
453620 biology/iqtree/Makefile
453620 biology/iqtree/distinfo
453620 devel/catch/Makefile
453620 devel/catch/distinfo
453620 games/openrct2/Makefile
453620 games/openrct2/distinfo
453620 games/sdlpop/Makefile
453620 games/sdlpop/distinfo
453620 math/tomsfastmath/Makefile
453620 security/bruteforceblocker/Makefile
Fix USE_GITHUB usage.

Sponsored by:	Absolight
Sat, 21 Oct 2017
[ 17:40 jrm ] Original commit   Revision:452596
452596 biology/iqtree/Makefile
biology/iqtree: Add EXAMPLES option and fix mess with installation of
example files in first commit
[ 16:57 jrm ] Original commit   Revision:452595
452595 biology/Makefile
452595 biology/iqtree
452595 biology/iqtree/Makefile
452595 biology/iqtree/distinfo
452595 biology/iqtree/pkg-descr
New port, biology/iqtree: Efficient phylogenomic software

WWW: http://www.iqtree.org/

Number of commits found: 24

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