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NOTE: There is a known problem on production with searching pkg-plist - it returns no results. This problem is not present on stage.freshports.org
non port: biology/jalview/Makefile
SVNWeb

Number of commits found: 20

Wed, 12 Oct 2022
[ 06:58 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:3a7900f35ad1dd7d0b4d152e66e9e357c7b2c158  commit hash:3a7900f35ad1dd7d0b4d152e66e9e357c7b2c158  commit hash:3a7900f35ad1dd7d0b4d152e66e9e357c7b2c158  3a7900f 
biology/jalview: Update 2.11.1.4 -> 2.11.2.5
Wed, 7 Sep 2022
[ 21:10 Stefan E├čer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Wed, 20 Jul 2022
[ 14:20 Tobias C. Berner (tcberner) search for other commits by this committer ]    commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671  37526bb  (Only the first 10 of 82 ports in this commit are shown above. View all ports for this commit)
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Thu, 30 Sep 2021
[ 21:23 Rene Ladan (rene) search for other commits by this committer ]    commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7  commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7  commit hash:620968a43a5f9bb3fa98ab20f257a4c0d864caa7  620968a  (Only the first 10 of 399 ports in this commit are shown above. View all ports for this commit)
cleanup: drop support for EOL FreeBSD 11.X

Search criteria used:
- 11.4
- OSREL*
- OSVER*
- *_FreeBSD_11

Input from:
- adridg: devel/qca-legacy
- jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds
- sunpoet: security/p5-*OpenSSL*

Reviewed by:	doceng, kde, multimedia, perl, python, ruby, rust
Differential Revision: https://reviews.freebsd.org/D32008
Test Plan: make index
Sun, 27 Jun 2021
[ 09:30 Guangyuan Yang (ygy) search for other commits by this committer ]    commit hash:389294d2b118284d007bf6a6df9b2530e4d6348a  commit hash:389294d2b118284d007bf6a6df9b2530e4d6348a  commit hash:389294d2b118284d007bf6a6df9b2530e4d6348a  389294d 
biology/jalview: Fix build

When switching the build dependency from devel/gradle to devel/gradle6,
the build is accidentally broken. This attempts to revert part of the
change and fix build.

Fixes:		55044a2200a4c42b6b653349f0a65dfca3f96f36
Approved by:	lwhsu (mentor, implicit), portmgr (fix build)
[ 01:51 Guangyuan Yang (ygy) search for other commits by this committer ]    commit hash:55044a2200a4c42b6b653349f0a65dfca3f96f36  commit hash:55044a2200a4c42b6b653349f0a65dfca3f96f36  commit hash:55044a2200a4c42b6b653349f0a65dfca3f96f36  55044a2 
devel/gradle6: New port

devel/gradle needs to be updated to 7.x, while some ports build failed
under the newer version, including:

- biology/jalview
- biology/igv

Updated them to use this devel/gradle6 until they officially support 7.x.
No functional changes for these ports.

Approved by:	lwhsu (mentor)
Sat, 5 Jun 2021
[ 18:53 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:8b8c1272ea64f9db05d8b5cfed709881429df479  commit hash:8b8c1272ea64f9db05d8b5cfed709881429df479  commit hash:8b8c1272ea64f9db05d8b5cfed709881429df479  8b8c127 
biology/jalview: Broken on 11

Also fix number of lines in pkg-descr, and replace space with tab.

Reported by:	fallout
Sat, 1 May 2021
[ 17:55 Tobias Kortkamp (tobik) search for other commits by this committer ]    commit hash:6707a3c942b51ab3e3cf110383e3119dfe2e49b0  commit hash:6707a3c942b51ab3e3cf110383e3119dfe2e49b0  commit hash:6707a3c942b51ab3e3cf110383e3119dfe2e49b0  6707a3c  (Only the first 10 of 47 ports in this commit are shown above. View all ports for this commit)
Clean up some things

- Fix typos
- Remove duplicate variables
- Remove nop variables
- Clean up commented PORTREVISION
- Add missing USES

Reported by:	portscan
Sun, 25 Apr 2021
[ 23:00 Yuri Victorovich (yuri) search for other commits by this committer ]    commit hash:af49fbec4f0f6453b4b3dfe522107ed2918ae8f7  commit hash:af49fbec4f0f6453b4b3dfe522107ed2918ae8f7  commit hash:af49fbec4f0f6453b4b3dfe522107ed2918ae8f7  af49fbe 
biology/jalview: Update 2.07 -> 2.11.1.4

Take maintainership.
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Sat, 26 Dec 2020
[ 23:01 glewis search for other commits by this committer ] Original commit   Revision:559318
Restrict to Java 8, since this doesn't compile with Java 11

PR:			251774
Tue, 26 Nov 2019
[ 21:46 jkim search for other commits by this committer ] Original commit   Revision:518482 (Only the first 10 of 443 ports in this commit are shown above. View all ports for this commit)
Clean up after java/openjdk6 and java/openjdk6-jre removal

java/openjdk6 support was removed from Mk/bsd.java.mk (r512662) and
java/openjdk6 and java/openjdk6-jre were removed from the ports tree
(r512663).  Now this patch completely removes remaining stuff from the
ports tree.

PR:			241953 (exp-run)
Reviewed by:		glewis
Approved by:		portmgr (antoine)
Differential Revision:	https://reviews.freebsd.org/D22342
Mon, 20 Jan 2014
[ 23:10 bapt search for other commits by this committer ] Original commit   Revision:340487
Support stage
Fri, 20 Sep 2013
[ 15:55 bapt search for other commits by this committer ] Original commit   Revision:327709 (Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Mon, 10 Dec 2012
[ 11:25 bapt search for other commits by this committer ] Original commit   Revision:308600 (Only the first 10 of 60 ports in this commit are shown above. View all ports for this commit)
Decommissioning java 1.5 (EOLed since October 2009):
suppress any reference to USE_JAVA=	1.5+ (part1)
Mon, 1 Oct 2012
[ 14:45 tabthorpe search for other commits by this committer ] Original commit   Revision:305130 (Only the first 10 of 47 ports in this commit are shown above. View all ports for this commit)
- Reassign to the heap at maintainer's request
Thu, 21 Jul 2011
[ 05:03 linimon search for other commits by this committer ] Original commit  (Only the first 10 of 269 ports in this commit are shown above. View all ports for this commit)
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
remove support for them from bsd.java.mk.  As Jikes is not available in Java 1.5
or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports
which used it (only occurences were USE_JIKES=no).  Support for the Blackdown VM
is also removed, as it is not available in Java 1.5 and higher.

Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect
old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5.
While here, replace static values of JAVA_VERSION in files/*.in by
%%JAVA_VERSION%% .

PR:             ports/158969
Submitted by:   rene
Tested on:      pointyhat-west -exp
Fri, 6 Jun 2008
[ 13:08 edwin search for other commits by this committer ] Original commit  (Only the first 10 of 13 ports in this commit are shown above. View all ports for this commit)
Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)
Sat, 19 May 2007
[ 20:32 flz search for other commits by this committer ] Original commit  (Only the first 10 of 7868 ports in this commit are shown above. View all ports for this commit)
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
Mon, 13 Feb 2006
[ 09:42 hq search for other commits by this committer ] Original commit 
Jalview is a multiple alignment editor written in Java. It is used widely in a
variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain
database) and is also available as a general purpose alignment editor.

WWW: http://www.jalview.org

PR:             93054
Submitted by:   Fernan Aguero <fernan@iib.unsam.edu.ar>

Number of commits found: 20