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non port: biology/lamarc/Makefile

Number of commits found: 34

Friday, 18 Aug 2023
06:57 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/lamarc: Mark BROKEN on 14

Fails to compile with:
error: no matching function for call to 'make_pair'

Sponsored by:	The FreeBSD Foundation
commit hash: bb82d0e6e11daebe05cb08b58987e3b18df0d2e3 commit hash: bb82d0e6e11daebe05cb08b58987e3b18df0d2e3 commit hash: bb82d0e6e11daebe05cb08b58987e3b18df0d2e3 commit hash: bb82d0e6e11daebe05cb08b58987e3b18df0d2e3 bb82d0e
Saturday, 31 Dec 2022
03:54 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/lamarc: Refactor after wxgtk28 removal

- Pet portclippy
commit hash: 5944c3a3e3201462e5e41895d48e12520c46a4d9 commit hash: 5944c3a3e3201462e5e41895d48e12520c46a4d9 commit hash: 5944c3a3e3201462e5e41895d48e12520c46a4d9 commit hash: 5944c3a3e3201462e5e41895d48e12520c46a4d9 5944c3a
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Saturday, 25 Aug 2018
03:13 tobik search for other commits by this committer
biology/lamarc: Fix build with Clang 6

src/tools/mathx.cpp:781:12: error: no matching function for call to 'make_pair'
    return std::make_pair<DoubleVec1d, DoubleVec2d>(eigvals, eigvecs);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/v1/utility:639:1: note: candidate function not viable: no known
conversion from 'DoubleVec1d' (aka 'vector<double>') to
'std::__1::vector<double, std::__1::allocator<double> > &&' for 1st argument
make_pair(_T1&& __t1, _T2&& __t2)
^

http://beefy11.nyi.freebsd.org/data/head-i386-default/p477696_s338122/logs/errors/lamarc-2.1.8_1,1.log
Original commitRevision:477992 
Thursday, 18 Aug 2016
09:31 amdmi3 search for other commits by this committer
- Switch to options helpers
- Regenerate patches with `make makepatch`
- Mark WXGTK option broken: does not build:
src/convErr/gc_errhandling.cpp:75:12: error: cannot initialize return object of
type 'const char *' with an rvalue of type 'const wxChar *' (aka 'const wchar_t
*')
Original commitRevision:420392 
Tuesday, 29 Dec 2015
14:30 mat search for other commits by this committer
Cleanup GH_* and variables order.

Sponsored by:	Absolight
Original commitRevision:404743 
Wednesday, 16 Sep 2015
19:51 bapt search for other commits by this committer
Remove ansi version fo wxGTK 2.8 and only keep the unicode version

All applications in the ports tree works correctly with unicode version of wxGTK

Newer version of wxGTK are unicode only (3.0+)

Note that now WX_UNICODE macro is noop
Original commitRevision:397077 
Sunday, 13 Sep 2015
18:45 bapt search for other commits by this committer
Enfoce unicode version of wxGTK
Original commitRevision:396851 
Monday, 30 Dec 2013
20:55 ohauer search for other commits by this committer
- rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk
- svn move Templates/Licenses/AL2 Templates/Licenses/APACHE20
- add APACHE10 and APACHE11 to Mk/bsd.licenses.db.mk
- add entry in UPDATING
- bulk change all ports AL2 => APACHE20

- math/openfst/pkg-plist: remove share/licenses/openfst-1.3.4

PR:		ports/184785
Submitted by:	ohauer
Reviewed by:	tabthorpe
Approved by:	portmgr (tabthorpe@)
Original commitRevision:338168 
Tuesday, 26 Nov 2013
15:37 wg search for other commits by this committer
biology/lamarc: fix build on current

PR:		ports/184219
Submitted by:	KATO Tsuguru <tkato432 yahoo.com>
Original commitRevision:334945 
Wednesday, 25 Sep 2013
00:54 bdrewery search for other commits by this committer
- Remove NO_STAGE as these have been tested to be safe

With hat:	portmgr
Original commitRevision:328226 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Wednesday, 14 Aug 2013
22:35 ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
Original commitRevision:324744 
Wednesday, 19 Jun 2013
15:39 bsam search for other commits by this committer
. trim Makefile headers;
. remove the indefinite article from COMMENT.
Original commitRevision:321281 
Sunday, 17 Jun 2012
20:22 sylvio search for other commits by this committer
- Update to version 2.1.8

Remove file:
files/patch-Makefile.in
files/patch-configure
files/patch-src__control__defaults.h
pkg-plist

PR:             ports/168994
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Original commit
Sunday, 3 Jun 2012
12:14 cs search for other commits by this committer
Set maintainership back to ports@
Original commit
Sunday, 20 May 2012
12:04 cs search for other commits by this committer
Remove non-serving mirror
Original commit
Monday, 9 Jan 2012
15:41 tabthorpe search for other commits by this committer
- The proper acronym for Apache Software License 2 is really AL2
- Thanks to crees@ for generating the initial patch

PR:             ports/163521
Submitted by:   Pedro Giffuni <pfg apache.org>
Hat:            portmgr
Exp run by:     pav
Original commit
Thursday, 15 Sep 2011
12:33 cs search for other commits by this committer
Change maintainer address to my FreeBSD address

Approved by:    wen@ (mentor)
Original commit
Thursday, 11 Aug 2011
19:20 kwm search for other commits by this committer
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
mid 2008.

PR:             ports/159624
Submitted by:   Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Original commit
Wednesday, 4 Aug 2010
06:30 lwhsu search for other commits by this committer
- Update to 2.1.5
- Pass maintainership to submitter

PR:             ports/149247
Submitted by:   C-S <c-s AT c-s.li>
Original commit
Wednesday, 10 Feb 2010
21:47 pgollucci search for other commits by this committer
- Reset more ports I don't use anymore
Original commit
Saturday, 16 May 2009
06:27 pgollucci search for other commits by this committer
- Mark most of my ports MAKE_JOBS_SAFE=yes

Tested by: several builds in P6 TB
Original commit
Thursday, 31 Jul 2008
16:18 pgollucci search for other commits by this committer
- Update to 2.1.3

Approved by:    gabor (mentor)
Original commit
Wednesday, 23 Jul 2008
02:43 pgollucci search for other commits by this committer
Update my ports to my freebsd address

Approved by:    araujo (mentor)
Original commit
Friday, 11 Jul 2008
17:24 araujo search for other commits by this committer
- Update to 2.1.2c.
- Pass maintainership to submitter.

PR:             ports/125497
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Original commit
Tuesday, 23 Oct 2007
23:07 miwi search for other commits by this committer
- Update to 2.1.2b

PR:             117336
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Original commit
Monday, 8 Oct 2007
13:04 miwi search for other commits by this committer
- Update to 2.1

PR:             116017
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Original commit
Thursday, 25 Jan 2007
11:10 vd search for other commits by this committer
Get rid of biology/coalesce dependency, it is deprecated and will be removed
shortly.
Original commit
Saturday, 20 Nov 2004
08:09 linimon search for other commits by this committer
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
Original commit
Friday, 7 Mar 2003
05:56 ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Original commit
Tuesday, 7 Aug 2001
09:17 wjv search for other commits by this committer
Add lamarc 2001.08.06,   a package of programs for computing   population
parameters.    
Original commit

Number of commits found: 34