| non port: biology/libsbml/Makefile |
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SVNWeb
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Number of commits found: 54 |
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Wed, 18 Jan 2023
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[ 14:47 Dima Panov (fluffy)  ]    4dc157d
biology/libsbml: unbreak build after 18c6e1827669 (+)
Changes in framework need adjustment for declared options.
*_USE=ruby now became as *_USES=ruby
Approved by: portmgr blanket
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above.  )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Wed, 20 Jul 2022
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[ 14:20 Tobias C. Berner (tcberner) ] 37526bb (Only the first 10 of 82 ports in this commit are shown above. )
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca> (Only the first 15 lines of the commit message are shown above )
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Sun, 10 Apr 2022
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[ 19:11 Charlie Li (vishwin) ] d63665f (Only the first 10 of 892 ports in this commit are shown above. )
textproc/libxml2: bump all LIB_DEPENDS consumers
This is a separate commit to facilitate easier cherry-picking for
quarterly.
PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)
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Sat, 26 Mar 2022
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[ 08:27 Matthias Fechner (mfechner) ] 247c7db (Only the first 10 of 867 ports in this commit are shown above. )
textproc/libxml2: bump all dependencies
This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246
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Mon, 1 Nov 2021
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[ 21:28 Po-Chuan Hsieh (sunpoet) ] 8ad9338
biology/libsbml: Fix build with Python 3.10
Obtained
from: https://github.com/sbmlteam/libsbml/commit/4f01a15fde1d8afa9eaffb4c13dfc83a3404f183
(based on)
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[ 15:28 Dmitry Marakasov (amdmi3) ] 893daf4
biology/libsbml: limit supported python versions
File
"/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.19.0/src/bindings/python/doc-converter/rewrite_pydoc.py",
line 121, in <module>
from formatter import NullWriter, AbstractFormatter
ModuleNotFoundError: No module named 'formatter'
Approved by: portmgr blanket
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Tue, 11 May 2021
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[ 21:46 Po-Chuan Hsieh (sunpoet) ] f747a64
biology/libsbml: Rename LIBXML option to LIBXML2
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Sun, 20 Dec 2020
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[ 15:23 sunpoet ]  
Set CMAKE options explicitly
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Sat, 19 Dec 2020
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[ 20:05 sunpoet ]
Add EXPAT, LIBXML and XERCES options
It allows choosing XML parser library.
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Thu, 10 Dec 2020
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[ 21:30 sunpoet ]
Update to 5.19.0
Changes: https://github.com/sbmlteam/libsbml/releases
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Tue, 29 Sep 2020
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[ 18:23 sunpoet ]
Convert REINPLACE_CMD to patch file
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Sun, 27 Sep 2020
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[ 19:30 sunpoet ]
Update PYTHON option to use Python 3
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Wed, 17 Jun 2020
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[ 18:17 sunpoet ] (Only the first 10 of 84 ports in this commit are shown above. )
Move devel/swig30 to devel/swig and update to 4.0.1
- Do not silence installation message
- Update dependent ports:
- Fix build with swig 4.0.1
- Update *_DEPENDS
- Remove BINARY_ALIAS
Changes: http://www.swig.org/news.php
PR: 246613
Exp-run by: antoine
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Sat, 8 Feb 2020
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[ 19:01 sunpoet ]
Clean up Makefile
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Sat, 22 Jun 2019
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[ 21:48 sunpoet ]
Use USES=pathfix
- Add USES=gnome
- Use = instead of += for PLIST_SUB
- Use CMAKE_BOOL
- Cosmetic change
- Take maintainership
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Mon, 20 May 2019
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[ 09:12 wen ]
- Update to 5.18.0
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Tue, 25 Dec 2018
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[ 20:25 tcberner ] (Only the first 10 of 1277 ports in this commit are shown above. )
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine
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Sat, 25 Aug 2018
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[ 03:31 tobik ]
biology/libsbml: Fix build with Clang 6
In file included from
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/Model.cpp:41:
In file included from
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBMLDocument.h:298:
In file included from
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBMLTransforms.h:48:
In file included from
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/FunctionDefinition.h:129:
In file included from
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBO.h:207:
/usr/include/c++/v1/map:629:15: error: object of type
'std::__1::pair<std::__1::pair<const std::__1::basic_string<char>, int>,
FormulaUnitsData *>' cannot be assigned because its copy assignment operator is
implicitly deleted
{__nc = __v.__cc; return *this;}
^
http://beefy11.nyi.freebsd.org/data/head-i386-default/p477696_s338122/logs/errors/libsbml-5.17.0.log
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Fri, 24 Aug 2018
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[ 06:24 linimon ]
Mark as broken with clang6 after r473289.
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Mon, 25 Jun 2018
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[ 01:37 wen ]
- Update to 5.17.0
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Mon, 1 Jan 2018
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[ 08:24 wen ]
- Update to 5.16.0
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Wed, 20 Dec 2017
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[ 19:34 bapt ] (Only the first 10 of 13 ports in this commit are shown above. )
Switch from swig 2.0 to swig 3.0
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Thu, 30 Nov 2017
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[ 15:50 mat ] (Only the first 10 of 2423 ports in this commit are shown above. )
Convert Python ports to FLAVORS.
Ports using USE_PYTHON=distutils are now flavored. They will
automatically get flavors (py27, py34, py35, py36) depending on what
versions they support.
There is also a USE_PYTHON=flavors for ports that do not use distutils
but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if
using distutils but flavors are not wanted.
A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
added to cope with Python ports that did not have the Python
PKGNAMEPREFIX but are flavored.
USES=python now also exports a PY_FLAVOR variable that contains the (Only the first 15 lines of the commit message are shown above )
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Thu, 18 May 2017
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[ 02:22 wen ]
- Update to 5.15.0
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Wed, 2 Nov 2016
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[ 22:45 mat ] (Only the first 10 of 110 ports in this commit are shown above. )
Cleanup no longer needed CHMOD usage after r424898.
PR: 213743
Submitted by: mat
Exp-run by: antoine
Sponsored by: Absolight
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Sat, 16 Apr 2016
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[ 01:54 mi ]
Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:
https://groups.google.com/forum/#!topic/sbml-discuss/OEq_49c_X78
Notified by: portscout
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Fri, 1 Apr 2016
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[ 13:29 mat ] (Only the first 10 of 1009 ports in this commit are shown above. )
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight
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Sun, 27 Mar 2016
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[ 07:09 wen ]
- Update to 5.12.0
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Wed, 14 Oct 2015
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[ 23:51 amdmi3 ]
- Add LICENSE_FILE
- Switch to options helpers
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Tue, 25 Aug 2015
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[ 13:15 rakuco ]
Switch to USES=iconv:build.
The port does not use iconv on its own, the only dependency comes via
libxml2, which has one header that includes iconv.h.
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Tue, 12 May 2015
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[ 08:58 wen ]
- Update to 5.11.4
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Sun, 4 Jan 2015
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[ 08:23 mva ]
- Convert USE_PYTHON -> USES leftovers missed in the previous commits
Spotted by: antoine
With hat: python
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Tue, 30 Dec 2014
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[ 12:57 wen ]
- Update to 5.11.0
PR: 196377
Submitted by: koue@chaosophia.net
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Sun, 10 Aug 2014
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[ 06:21 wen ]
- Update to 5.10.2
PR: 192198
Submitted by: tkato432@yahoo.com
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Sat, 9 Aug 2014
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[ 15:44 mva ] (Only the first 10 of 31 ports in this commit are shown above. )
Convert the Python framework bits to USES=python.
Please use USES=python instead of USE_PYTHON.
USE_PYTHON=yes becomes USES=python
USE_PYTHON=2.7+ becomes USES=python:2.7+
USE_PYTHON_BUILD=3.3 becomes USES=python:3.3,build
...
A new PYTHON_FEATURES variable was added, which enables certain features for a
port and replaces some knobs at the same time;
PYTHON_FEATURES=distutils replaces USE_PYDISTUTILS
PYTHON_FEATURES=autoplist replaces PYDISTUTILS_AUTOPLIST
PYTHON_FEATURES=py3kplist replaces PYTHON_PY3K_PLIST_HACK (Only the first 15 lines of the commit message are shown above )
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Tue, 13 May 2014
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[ 07:04 wen ]
- Update to 5.10.0
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[ 02:46 wen ]
- Update to 5.9.0 [1]
- Stage support [1]
- Add LICENSE [1]
- Reset maintainer to port@
PR: 188554 [1]
Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com> [1]
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Wed, 16 Apr 2014
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[ 18:28 zeising ] (Only the first 10 of 1008 ports in this commit are shown above. )
The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:
NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE
This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.
This patch also contains updates of libxcb and related ports, pixman, as well (Only the first 15 lines of the commit message are shown above )
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Fri, 7 Mar 2014
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[ 15:52 bapt ]
Convert b* to USES=zip
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Wed, 15 Jan 2014
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[ 22:50 bapt ]
Reduce over inclusion of bsd.port.mk
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Wed, 11 Dec 2013
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[ 14:43 bapt ] (Only the first 10 of 12 ports in this commit are shown above. )
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
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Sun, 1 Dec 2013
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[ 01:58 wen ]
- Fix build on head
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Thu, 10 Oct 2013
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[ 18:08 tabthorpe ]
- Switch to build with lang/ruby19
- No PORTREVISION bump, option is off by default
With hat: portmgr
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Fri, 20 Sep 2013
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[ 15:55 bapt ] (Only the first 10 of 94 ports in this commit are shown above. )
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Mon, 18 Mar 2013
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[ 06:50 jgh ]
- adoption of optionsNG
- trim historical header
- tighten COMMENT
Approved by: portmgr (miwi)
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Fri, 8 Oct 2010
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[ 02:06 wen ]
- Update to 4.2.0
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Thu, 16 Sep 2010
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[ 03:31 wen ]
- Update to 4.1.0
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Mon, 24 May 2010
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[ 07:19 wen ]
- Update to 4.0.1
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Fri, 20 Nov 2009
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[ 22:53 pav ] (Only the first 10 of 102 ports in this commit are shown above. )
- Mark MAKE_JOBS_UNSAFE
Reported by: pointyhat
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Wed, 23 Sep 2009
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[ 01:06 wen ]
- Update to 4.0.0
- Update my mail address to FreeBSD
PR: ports/137652
Submitted by: wenheping@gmail.com(myself)
Approved by: miwi(mentor)
Feature safe: yes
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Sat, 22 Aug 2009
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[ 00:15 amdmi3 ] (Only the first 10 of 78 ports in this commit are shown above. )
- Switch SourceForge ports to the new File Release System: categories starting
with B,C
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Thu, 28 May 2009
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[ 23:36 miwi ]
LibSBML is an open-source programming library to help you read, write,
manipulate, translate, and validate SBML files and data streams. It is
not an application itself (though it does come with example programs),
but rather a library you can embed in your own applications.
LibSBML understands all Levels and Versions of SBML, as well as the
SBML Layout proposal by Gauges, Rost, Sahle and Wegner. It's written in
ISO C and C++ but can be used from all the languages listed in the
right-hand box.
WWW: http://www.sbml.org/
PR: ports/135022
Submitted by: Wen Heping <wenheping at gmail.com>
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Number of commits found: 54 |
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