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non port: biology/libsbml/Makefile
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Number of commits found: 38

Sat, 22 Jun 2019
[ 21:48 sunpoet ] Original commit   Revision:504890
504890 biology/libsbml/Makefile
Use USES=pathfix

- Add USES=gnome
- Use = instead of += for PLIST_SUB
- Use CMAKE_BOOL
- Cosmetic change
- Take maintainership
Mon, 20 May 2019
[ 09:12 wen ] Original commit   Revision:502097
502097 biology/libsbml/Makefile
502097 biology/libsbml/distinfo
502097 biology/libsbml/pkg-plist
- Update to 5.18.0
Tue, 25 Dec 2018
[ 20:25 tcberner ] Original commit   Revision:488341
488341 CHANGES
488341 Mk/Uses/cmake.mk
488341 accessibility/jovie-kde4/Makefile
488341 accessibility/kaccessible-kde4/Makefile
488341 accessibility/kmag-kde4/Makefile
488341 accessibility/kmag/Makefile
488341 accessibility/kmousetool-kde4/Makefile
488341 accessibility/kmousetool/Makefile
488341 accessibility/kmouth-kde4/Makefile
488341 accessibility/kmouth/Makefile

(Only the first 10 of 1277 ports in this commit are shown above. View all ports for this commit)
Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine
Sat, 25 Aug 2018
[ 03:31 tobik ] Original commit   Revision:477994
477994 biology/libsbml/Makefile
biology/libsbml: Fix build with Clang 6

In file included from
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/Model.cpp:41:
In file included from
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBMLDocument.h:298:
In file included from
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBMLTransforms.h:48:
In file included from
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/FunctionDefinition.h:129:
In file included from
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.17.0/src/sbml/SBO.h:207:
/usr/include/c++/v1/map:629:15: error: object of type
'std::__1::pair<std::__1::pair<const std::__1::basic_string<char>, int>,
FormulaUnitsData *>' cannot be assigned because its copy assignment operator is
implicitly deleted
        {__nc = __v.__cc; return *this;}
              ^

http://beefy11.nyi.freebsd.org/data/head-i386-default/p477696_s338122/logs/errors/libsbml-5.17.0.log
Fri, 24 Aug 2018
[ 06:24 linimon ] Original commit   Revision:477936
477936 biology/libsbml/Makefile
Mark as broken with clang6 after r473289.
Mon, 25 Jun 2018
[ 01:37 wen ] Original commit   Revision:473289
473289 biology/libsbml/Makefile
473289 biology/libsbml/distinfo
473289 biology/libsbml/pkg-plist
- Update to 5.17.0
Mon, 1 Jan 2018
[ 08:24 wen ] Original commit   Revision:457754
457754 biology/libsbml/Makefile
457754 biology/libsbml/distinfo
457754 biology/libsbml/pkg-plist
- Update to 5.16.0
Wed, 20 Dec 2017
[ 19:34 bapt ] Original commit   Revision:456845
456845 audio/libgpod/Makefile
456845 biology/libsbml/Makefile
456845 comms/gnuradio/Makefile
456845 comms/owfs/Makefile
456845 devel/libftdi1/Makefile
456845 devel/py-instant/Makefile
456845 dns/ldns/Makefile
456845 emulators/gem5/Makefile
456845 graphics/hugin/Makefile
456845 graphics/mapserver/Makefile

(Only the first 10 of 13 ports in this commit are shown above. View all ports for this commit)
Switch from swig 2.0 to swig 3.0
Thu, 30 Nov 2017
[ 15:50 mat ] Original commit   Revision:455210
455210 CHANGES
455210 MOVED
455210 Mk/Uses/gnome.mk
455210 Mk/Uses/pyqt.mk
455210 Mk/Uses/python.mk
455210 UPDATING
455210 accessibility/Makefile
455210 accessibility/accerciser/Makefile
455210 accessibility/caribou/Makefile
455210 accessibility/orca/Makefile

(Only the first 10 of 2423 ports in this commit are shown above. View all ports for this commit)
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Thu, 18 May 2017
[ 02:22 wen ] Original commit   Revision:441126
441126 biology/libsbml/Makefile
441126 biology/libsbml/distinfo
441126 biology/libsbml/pkg-plist
- Update to 5.15.0
Wed, 2 Nov 2016
[ 22:45 mat ] Original commit   Revision:425174
425174 audio/festdoc/Makefile
425174 audio/festlex-oald/Makefile
425174 audio/festlex-ogi/Makefile
425174 audio/festvox-don/Makefile
425174 audio/festvox-el11/Makefile
425174 audio/festvox-kal8/Makefile
425174 audio/festvox-ked16/Makefile
425174 audio/festvox-ked8/Makefile
425174 audio/festvox-rab16/Makefile
425174 audio/festvox-rab8/Makefile

(Only the first 10 of 110 ports in this commit are shown above. View all ports for this commit)
Cleanup no longer needed CHMOD usage after r424898.

PR:		213743
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Sat, 16 Apr 2016
[ 01:54 mi ] Original commit   Revision:413410
413410 biology/libsbml/Makefile
413410 biology/libsbml/distinfo
413410 biology/libsbml/pkg-plist
Upgrade from 5.12.0 to 5.13.0. Release-announcement available here:

	https://groups.google.com/forum/#!topic/sbml-discuss/OEq_49c_X78

Notified by:	portscout
Fri, 1 Apr 2016
[ 13:29 mat ] Original commit   Revision:412344
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile

(Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Sun, 27 Mar 2016
[ 07:09 wen ] Original commit   Revision:411978
411978 biology/libsbml/Makefile
411978 biology/libsbml/distinfo
411978 biology/libsbml/pkg-plist
- Update to 5.12.0
Wed, 14 Oct 2015
[ 23:51 amdmi3 ] Original commit   Revision:399316
399316 biology/libsbml/Makefile
- Add LICENSE_FILE
- Switch to options helpers
Tue, 25 Aug 2015
[ 13:15 rakuco ] Original commit   Revision:395248
395248 biology/libsbml/Makefile
Switch to USES=iconv:build.

The port does not use iconv on its own, the only dependency comes via
libxml2, which has one header that includes iconv.h.
Tue, 12 May 2015
[ 08:58 wen ] Original commit   Revision:386129
386129 biology/libsbml/Makefile
386129 biology/libsbml/distinfo
386129 biology/libsbml/pkg-plist
- Update to 5.11.4
Sun, 4 Jan 2015
[ 08:23 mva ] Original commit   Revision:376179
376179 audio/streamtuner/Makefile
376179 biology/libsbml/Makefile
376179 databases/cassandra2/Makefile
376179 deskutils/recoll/Makefile
376179 devel/hachoir-core/Makefile
376179 devel/streamhtmlparser/Makefile
376179 graphics/graphviz/Makefile
376179 security/broccoli/Makefile
376179 security/openconnect/Makefile
- Convert USE_PYTHON -> USES leftovers missed in the previous commits

Spotted by:	antoine
With hat:	python
Tue, 30 Dec 2014
[ 12:57 wen ] Original commit   Revision:375831
375831 biology/libsbml/Makefile
375831 biology/libsbml/distinfo
375831 biology/libsbml/pkg-plist
- Update to 5.11.0

PR:		196377
Submitted by:	koue@chaosophia.net
Sun, 10 Aug 2014
[ 06:21 wen ] Original commit   Revision:364504
364504 biology/libsbml/Makefile
364504 biology/libsbml/distinfo
364504 biology/libsbml/files
364504 biology/libsbml/pkg-plist
- Update to 5.10.2

PR:		192198
Submitted by:	tkato432@yahoo.com
Sat, 9 Aug 2014
[ 15:44 mva ] Original commit   Revision:364450
364450 CHANGES
364450 Mk/Uses/python.mk
364450 Mk/bsd.port.mk
364450 Mk/bsd.port.subdir.mk
364450 Mk/bsd.python.mk
364450 Mk/bsd.sanity.mk
364450 Mk/bsd.sites.mk
364450 audio/rhythmbox/Makefile
364450 biology/libsbml/Makefile
364450 databases/ldb/Makefile

(Only the first 10 of 31 ports in this commit are shown above. View all ports for this commit)
Convert the Python framework bits to USES=python.

Please use USES=python instead of USE_PYTHON.

  USE_PYTHON=yes becomes USES=python
  USE_PYTHON=2.7+ becomes USES=python:2.7+
  USE_PYTHON_BUILD=3.3 becomes USES=python:3.3,build
  ...

A new PYTHON_FEATURES variable was added, which enables certain features for a
port and replaces some knobs at the same time;

  PYTHON_FEATURES=distutils replaces USE_PYDISTUTILS
  PYTHON_FEATURES=autoplist replaces PYDISTUTILS_AUTOPLIST
  PYTHON_FEATURES=py3kplist replaces PYTHON_PY3K_PLIST_HACK
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Tue, 13 May 2014
[ 07:04 wen ] Original commit   Revision:353921
353921 biology/libsbml/Makefile
353921 biology/libsbml/distinfo
353921 biology/libsbml/pkg-plist
- Update to 5.10.0
[ 02:46 wen ] Original commit   Revision:353913
353913 biology/libsbml/Makefile
353913 biology/libsbml/distinfo
353913 biology/libsbml/pkg-plist
- Update to 5.9.0 [1]
- Stage support [1]
- Add LICENSE [1]
- Reset maintainer to port@

PR:		188554 [1]
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com> [1]
Wed, 16 Apr 2014
[ 18:28 zeising ] Original commit   Revision:351411
351411 Mk/bsd.port.mk
351411 Mk/bsd.xorg.mk
351411 UPDATING
351411 accessibility/gok/Makefile
351411 archivers/libarchive/Makefile
351411 archivers/xar/Makefile
351411 astro/boinc-astropulse/Makefile
351411 astro/boinc-setiathome-v7/Makefile
351411 astro/celestia/Makefile
351411 astro/foxtrotgps/Makefile

(Only the first 10 of 1008 ports in this commit are shown above. View all ports for this commit)
The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:

NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE

This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.

This patch also contains updates of libxcb and related ports, pixman, as well
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 7 Mar 2014
[ 15:52 bapt ] Original commit   Revision:347402
347402 benchmarks/netio/Makefile
347402 benchmarks/pybench/Makefile
347402 benchmarks/scimark2/Makefile
347402 benchmarks/scimark2c/Makefile
347402 biology/biojava/Makefile
347402 biology/blat/Makefile
347402 biology/libsbml/Makefile
347402 biology/plink/Makefile
347402 biology/seqan/Makefile
Convert b* to USES=zip
Wed, 15 Jan 2014
[ 22:50 bapt ] Original commit   Revision:339844
339844 biology/libsbml/Makefile
Reduce over inclusion of bsd.port.mk
Wed, 11 Dec 2013
[ 14:43 bapt ] Original commit   Revision:336171
336171 biology/crux/Makefile
336171 biology/embassy/Makefile
336171 biology/emboss/Makefile
336171 biology/iolib/Makefile
336171 biology/libsbml/Makefile
336171 biology/mopac/Makefile
336171 biology/ortep3/Makefile
336171 biology/plink/Makefile
336171 biology/plinkseq/Makefile
336171 biology/protomol/Makefile

(Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
In preparation for making libtool generate libraries with a sane name, fix all
LIB_DEPENDS in biology
Sun, 1 Dec 2013
[ 01:58 wen ] Original commit   Revision:335360
335360 biology/libsbml/Makefile
- Fix build on head
Thu, 10 Oct 2013
[ 18:08 tabthorpe ] Original commit   Revision:330025
330025 biology/libsbml/Makefile
- Switch to build with lang/ruby19
- No PORTREVISION bump, option is off by default

With hat:	portmgr
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Mon, 18 Mar 2013
[ 06:50 jgh ] Original commit   Revision:314530
314530 biology/libsbml/Makefile
- adoption of optionsNG
- trim historical header
- tighten COMMENT

Approved by:	portmgr (miwi)
Fri, 8 Oct 2010
[ 02:06 wen ] Original commit 
1.7 biology/libsbml/Makefile
1.5 biology/libsbml/distinfo
1.4 biology/libsbml/pkg-plist
- Update to 4.2.0
Thu, 16 Sep 2010
[ 03:31 wen ] Original commit 
1.6 biology/libsbml/Makefile
1.4 biology/libsbml/distinfo
1.3 biology/libsbml/pkg-plist
- Update to 4.1.0
Mon, 24 May 2010
[ 07:19 wen ] Original commit 
1.5 biology/libsbml/Makefile
1.3 biology/libsbml/distinfo
- Update to 4.0.1
Fri, 20 Nov 2009
[ 22:53 pav ] Original commit 
1.13 archivers/kbackup/Makefile
1.7 audio/libjackasyn/Makefile
1.34 audio/pd/Makefile
1.6 audio/praat/Makefile
1.16 benchmarks/nbench/Makefile
1.5 benchmarks/pathchirp/Makefile
1.4 benchmarks/pathload/Makefile
1.4 biology/libsbml/Makefile
1.2 biology/mapm3/Makefile
1.28 cad/leocad/Makefile

(Only the first 10 of 102 ports in this commit are shown above. View all ports for this commit)
- Mark MAKE_JOBS_UNSAFE

Reported by:    pointyhat
Wed, 23 Sep 2009
[ 01:06 wen ] Original commit 
1.3 biology/libsbml/Makefile
1.2 biology/libsbml/distinfo
1.2 biology/libsbml/files/patch-Makefile.in
1.2 biology/libsbml/pkg-plist
- Update to 4.0.0
- Update my mail address to FreeBSD

PR:             ports/137652
Submitted by:   wenheping@gmail.com(myself)
Approved by:    miwi(mentor)
Feature safe:   yes
Sat, 22 Aug 2009
[ 00:15 amdmi3 ] Original commit 
1.22 benchmarks/iperf/Makefile
1.24 benchmarks/lmbench/Makefile
1.14 benchmarks/sysbench/Makefile
1.26 biology/avida/Makefile
1.2 biology/libsbml/Makefile
1.23 biology/mopac/Makefile
1.10 biology/protomol/Makefile
1.2 biology/pycogent/Makefile
1.9 cad/adms/Makefile
1.7 cad/atlc/Makefile

(Only the first 10 of 78 ports in this commit are shown above. View all ports for this commit)
- Switch SourceForge ports to the new File Release System: categories starting
with B,C
Thu, 28 May 2009
[ 23:36 miwi ] Original commit 
1.106 biology/Makefile
1.1 biology/libsbml/Makefile
1.1 biology/libsbml/distinfo
1.1 biology/libsbml/files/patch-Makefile.in
1.1 biology/libsbml/pkg-descr
1.1 biology/libsbml/pkg-plist
LibSBML is an open-source programming library to help you read, write,
manipulate, translate, and validate SBML files and data streams. It is
not an application itself (though it does come with example programs),
but rather a library you can embed in your own applications.

LibSBML understands all Levels and Versions of SBML, as well as the
SBML Layout proposal by Gauges, Rost, Sahle and Wegner. It's written in
ISO C and C++ but can be used from all the languages listed in the
right-hand box.

WWW: http://www.sbml.org/

PR:             ports/135022
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 38

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