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Port details on branch 2022Q3
megahit Ultra-fast single-node large and complex metagenomics assembly
1.2.9_1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.2.9_1Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-11-22 16:42:09
Last Update: 2022-11-24 14:10:13
Commit Hash: 4b98707
License: GPLv3
WWW:
https://github.com/voutcn/megahit
Description:
MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly. MEGAHIT can optionally utilize a CUDA-enabled GPU to accelerate its SdBG contstruction.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (20 items)
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  1. /usr/local/share/licenses/megahit-1.2.9_1/catalog.mk
  2. /usr/local/share/licenses/megahit-1.2.9_1/LICENSE
  3. /usr/local/share/licenses/megahit-1.2.9_1/GPLv3
  4. bin/megahit
  5. bin/megahit_core
  6. bin/megahit_core_no_hw_accel
  7. bin/megahit_core_popcnt
  8. bin/megahit_toolkit
  9. share/megahit/test_data/empty.fa
  10. share/megahit/test_data/generate_random_fasta.py
  11. share/megahit/test_data/loop.fa
  12. share/megahit/test_data/r1.il.fa.gz
  13. share/megahit/test_data/r2.il.fa.bz2
  14. share/megahit/test_data/r3_1.fa
  15. share/megahit/test_data/r3_2.fa
  16. share/megahit/test_data/r4.fa
  17. share/megahit/test_data/ref.fa
  18. @owner
  19. @group
  20. @mode
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Dependency lines:
  • megahit>0:biology/megahit
To install the port:
cd /usr/ports/biology/megahit/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/megahit
  • pkg install megahit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: megahit
Flavors: there is no flavor information for this port.
ONLY_FOR_ARCHS: amd64 powerpc64 powerpc64le riscv64
distinfo:
TIMESTAMP = 1669058254 SHA256 (voutcn-megahit-v1.2.9_GH0.tar.gz) = 09026eb07cc4e2d24f58b0a13f7a826ae8bb73da735a47cb1cbe6e4693118852 SIZE (voutcn-megahit-v1.2.9_GH0.tar.gz) = 268591

Packages (timestamps in pop-ups are UTC):
megahit
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest-1.2.9_1------
FreeBSD:13:quarterly-1.2.9_1------
FreeBSD:14:latest-1.2.9_1------
FreeBSD:14:quarterly-1.2.9_1------
FreeBSD:15:latest-1.2.9_1n/a-n/a---
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. cmake : devel/cmake-core
  2. ninja : devel/ninja
  3. python3.9 : lang/python39
Runtime dependencies:
  1. python3.9 : lang/python39
There are no ports dependent upon this port

Configuration Options:
No options to configure
Options name:
biology_megahit
USES:
cmake python shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
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  1. https://codeload.github.com/voutcn/megahit/tar.gz/v1.2.9?dummy=/
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There are no commits on branch 2022Q3 for this port