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non port: biology/migrate/Makefile

Number of commits found: 52

Friday, 12 Apr 2024
20:07 Nuno Teixeira (eduardo) search for other commits by this committer
biology/migrate: Use system zlib instead of excluding it from extract

Fixes:		dc29da5db6e6e: Fix extract on aarch64
commit hash: 882ecb2d7f689fa041a90196eff83985891af398 commit hash: 882ecb2d7f689fa041a90196eff83985891af398 commit hash: 882ecb2d7f689fa041a90196eff83985891af398 commit hash: 882ecb2d7f689fa041a90196eff83985891af398 882ecb2
Tuesday, 9 Apr 2024
07:29 Nuno Teixeira (eduardo) search for other commits by this committer
biology/migrate: Fix distinfo

Upstream re-rolled tarball.
commit hash: 42af8b83722f85e725aa0450d8557c8a5d4a742b commit hash: 42af8b83722f85e725aa0450d8557c8a5d4a742b commit hash: 42af8b83722f85e725aa0450d8557c8a5d4a742b commit hash: 42af8b83722f85e725aa0450d8557c8a5d4a742b 42af8b8
Sunday, 31 Mar 2024
21:47 Nuno Teixeira (eduardo) search for other commits by this committer
biology/migrate: Update to 5.0.6

ChangeLog: https://peterbeerli.com/programs/migrate/distribution_4.x/HISTORY
commit hash: 9dd66e05593b3f4033cd382e03808e825cc6bfda commit hash: 9dd66e05593b3f4033cd382e03808e825cc6bfda commit hash: 9dd66e05593b3f4033cd382e03808e825cc6bfda commit hash: 9dd66e05593b3f4033cd382e03808e825cc6bfda 9dd66e0
Wednesday, 27 Mar 2024
12:36 Nuno Teixeira (eduardo) search for other commits by this committer
biology/migrate: Fix extract

Extract fails on aarch64 with error:
(sample)
"dynsections.js: Cannot restore extended attributes:
com.apple.quarantine com.apple.quarantine: No such file or directory"
tar: Error exit delayed from previous errors.-

Fix extract with: --no-same-owner --no-same-permissions
commit hash: dc29da5db6e6ea3932e48facb66c7bfc97dd8cee commit hash: dc29da5db6e6ea3932e48facb66c7bfc97dd8cee commit hash: dc29da5db6e6ea3932e48facb66c7bfc97dd8cee commit hash: dc29da5db6e6ea3932e48facb66c7bfc97dd8cee dc29da5
11:51 Nuno Teixeira (eduardo) search for other commits by this committer
biology/migrate: Update to 5.0.5

- Switch to DISTVERSION
- Add license
- Pet portlint, portclippy and portfmt
- Take maintainership

ChangeLog: https://peterbeerli.com/programs/migrate/distribution_4.x/HISTORY
commit hash: c492a5b3d4b19112ddfe49fb196b54ccfbc29996 commit hash: c492a5b3d4b19112ddfe49fb196b54ccfbc29996 commit hash: c492a5b3d4b19112ddfe49fb196b54ccfbc29996 commit hash: c492a5b3d4b19112ddfe49fb196b54ccfbc29996 c492a5b
Tuesday, 9 Jan 2024
15:41 Baptiste Daroussin (bapt) search for other commits by this committer
MAN[1-5]PREFIX: eleminate its usage  and move man to share/man
commit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5d commit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5d commit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5d commit hash: e10e2022a9b32f3a8011a08e3929fa263a7bdb5d e10e202
Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Sunday, 6 Feb 2022
18:36 Stefan Eßer (se) search for other commits by this committer
Update CONFLICTS definitions in categories a* to c*

Update the CONFLICTS definitions of ports in the following categories:

- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters

An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.

There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.

Approved by:	portmgr (implicit)
commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e bdd2d4a
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Tuesday, 19 Jan 2021
02:26 linimon search for other commits by this committer
Mark BROKEN on riscv64 the same as armv*:

  # make[2]: cannot open makefile..

Note the filname reported is "Makefile." (e.g. probably empty suffix).

Approved by:	portmgr (tier-2 blanket)
Obtained from:	lonesome.com build testing
Original commitRevision:562005 
Sunday, 18 Mar 2018
13:48 linimon search for other commits by this committer
Mark broken on armvX and mips.
Original commitRevision:464909 
Sunday, 17 Apr 2016
10:16 amdmi3 search for other commits by this committer
- Switch to options helpers
- Regenerate patches with `make makepatch`
- Simplify plist
Original commitRevision:413499 
Sunday, 28 Jun 2015
15:30 wen search for other commits by this committer
- Update options
Original commitRevision:390793 
13:31 wen search for other commits by this committer
- Update to 3.6.11
- Convert to optionsNG
Original commitRevision:390780 
Monday, 18 May 2015
00:24 wen search for other commits by this committer
- Update to 3.6.9 and unbreak
Original commitRevision:386649 
Sunday, 5 Apr 2015
17:55 bapt search for other commits by this committer
Mark as broken unfetchable ports
Original commitRevision:383309 
Tuesday, 24 Mar 2015
16:56 mi search for other commits by this committer
Upgrade from 3.6.6 to 3.6.7. Be sure to not extract the zlib
subdirectory.
Original commitRevision:382123 
16:01 marino search for other commits by this committer
6 ports categories: Remove $PTHREAD_LIBS

Categories: cad, devel, java, x11-fm, biology, deskutils

approved by:	PTHREAD blanket
Original commitRevision:382111 
Saturday, 31 Jan 2015
06:35 wen search for other commits by this committer
- Update to 3.6.6

PR:		197039
Submitted by:	antont@inbox.lv
Original commitRevision:378190 
Saturday, 6 Dec 2014
14:54 wen search for other commits by this committer
- Update to 3.6.5
- Reset maintainer to ports@
Original commitRevision:374114 
Wednesday, 29 Jan 2014
12:08 danfe search for other commits by this committer
- Stagify; cleanup Makefile and reorder the knobs a bit
- Drop the case for long unsupported alpha architecture
Original commitRevision:341721 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Sunday, 26 May 2013
07:49 wen search for other commits by this committer
- Update to 3.5.1
- Trim Makefile headers
- Convert to optionsNG
- Update WWW, MASTER_SITES and COMMENT
Original commitRevision:319096 
Friday, 26 Apr 2013
04:03 gjb search for other commits by this committer
Update MASTERSITES for my server to use https

Approved by:	wen (maintainer, implicit)
Original commitRevision:316568 
Monday, 14 Mar 2011
00:35 wen search for other commits by this committer
- Take maintainership
Original commit
Sunday, 13 Mar 2011
06:08 tabthorpe search for other commits by this committer
- Reassign to the heap

PR:             ports/155507 ports/155508
Original commit
Friday, 1 Oct 2010
01:06 sunpoet search for other commits by this committer
- Add an additional MASTER_SITES

PR:             ports/151112
Submitted by:   gjb (maintainer)
Approved by:    pgollucci (mentor)
Original commit
Saturday, 4 Sep 2010
15:32 decke search for other commits by this committer
- Update MAINTAINER to submitters new mail address

PR:             ports/150274
Submitted by:   Glen Barber <glen dot j dot barber at gmail dot com>
(maintainer)
Approved by:    beat (co-mentor, implicit)
Original commit
Sunday, 30 May 2010
23:46 sylvio search for other commits by this committer
- Update to 3.1.6

PR:             ports/147194
Submitted by:   Glen Barber <glen.j.barber@gmail.com> (maintainer)
Original commit
Sunday, 9 May 2010
13:59 sylvio search for other commits by this committer
- Update to 3.1.4

PR:             ports/146411
Submitted by:   Glen Barber <glen.j.barber@gmail.com> (maintainer)
Original commit
Wednesday, 24 Mar 2010
06:46 wen search for other commits by this committer
- Update to 3.1.3
- Pass maintainership to submitter

PR:             ports/144992
Submitted by:   Glen Barber <glen.j.barber@gmail.com>
Original commit
Wednesday, 10 Feb 2010
09:47 edwin search for other commits by this committer
Update to 3.1.2
Original commit
Tuesday, 2 Feb 2010
22:42 miwi search for other commits by this committer
- Update to 3.1.1

PR:             143437
Submitted by:   Ports Fury
Original commit
Wednesday, 14 Jan 2009
16:00 miwi search for other commits by this committer
- Update to 3.0.3

PR:             130459
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Original commit
Wednesday, 27 Feb 2008
07:34 miwi search for other commits by this committer
- File was rerolled for a small bugfix.

Submitted by:   pointyhat via pav/erwin
Original commit
Monday, 25 Feb 2008
22:34 miwi search for other commits by this committer
- Update to 2.4.3

Submitted by:   Ports Fury
Original commit
Friday, 25 Jan 2008
20:49 miwi search for other commits by this committer
- Update to 2.4.2 (fix fetch problems)

Submitted by:   pointyhat via pav
Original commit
Sunday, 20 Jan 2008
21:56 miwi search for other commits by this committer
- Update to 2.4.1

PR:             119719
Submitted by:   KATO Tsuguru <tkato432@yahoo.com>
Original commit
Monday, 3 Sep 2007
09:24 itetcu search for other commits by this committer
- Update to version 2.3

PR:             ports/116019
Submitted by:   KATO Tsuguru
Original commit
Sunday, 10 Dec 2006
12:39 gabor search for other commits by this committer
- Update to 2.1.3
- Fix fetching
- Remove old patch and use MAKE_ARGS instead
- portlint(1) and whitespace

Approved by:    erwin (mentor)
Original commit
Wednesday, 3 May 2006
23:26 edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
Original commit
Tuesday, 12 Apr 2005
03:26 obrien search for other commits by this committer
At Kris's request, back out the MACHINE_ARCH spelling correction until
after 5.4-RELEASE.
Original commit
Monday, 11 Apr 2005
08:04 obrien search for other commits by this committer
Assist getting more ports working on AMD64 by obeying the
Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.
Original commit
Saturday, 19 Feb 2005
06:38 krion search for other commits by this committer
Fix build on 4.x

PR:             ports/77697
Submitted by:   Sam Lawrance <boris at brooknet.com.au>
Original commit
Friday, 18 Feb 2005
13:45 krion search for other commits by this committer
Update to version 2.0.3

PR:             ports/77676
Submitted by:   Sam Lawrance <boris at brooknet.com.au>
Original commit
Saturday, 22 Jan 2005
04:43 linimon search for other commits by this committer
With portmgr hat on, reset maintainership of this port.  All of wjv's
other ports were reset a couple of months ago; this one appears to have
been missed.
Original commit
Wednesday, 30 Jun 2004
06:55 linimon search for other commits by this committer
Update to 1.7.6.1.

PR:             ports/67429
Submitted by:   Roman Neuhauser <neuhauser at chello dot cz>
Approved by:    maintainer timeout (4 weeks)
Original commit
Monday, 23 Feb 2004
03:59 kris search for other commits by this committer
BROKEN on alpha: Does not compile
Original commit
Friday, 7 Mar 2003
05:56 ade search for other commits by this committer
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Original commit
Wednesday, 22 Aug 2001
15:43 wjv search for other commits by this committer
- Update to version 1.2.4    
Original commit
Monday, 6 Aug 2001
14:07 wjv search for other commits by this committer
Add migrate 1.2,   a program to estimate population sizes and   migration rates.
   
Original commit

Number of commits found: 52