| Port details on branch 2022Q3 |
- mmseqs2 Ultra fast and sensitive sequence search and clustering suite
- 13.45111_2 biology
 =0      13.45111_2Version of this port present on the latest quarterly branch. - Maintainer: jwb@FreeBSD.org
- Port Added: 2022-08-14 00:33:15
- Last Update: 2022-07-23 16:41:44
- Commit Hash: d5bf9f6
- License: GPLv3
- WWW:
- https://github.com/soedinglab/MMseqs2
- Description:
- MMseqs2 (Many-against-Many sequence searching) is a software suite to search
and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source
GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta
version, via cygwin) Windows. The software is designed to run on multiple cores
and servers and exhibits very good scalability. MMseqs2 can run 10000 times
faster than BLAST. At 100 times its speed it achieves almost the same
sensitivity. It can perform profile searches with the same sensitivity as
PSI-BLAST at over 400 times its speed.
WWW: https://github.com/soedinglab/MMseqs2
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- MMseqs2>0:biology/mmseqs2
- To install the port:
- cd /usr/ports/biology/mmseqs2/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/mmseqs2
- pkg install MMseqs2
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: MMseqs2
- Flavors: there is no flavor information for this port.
- NOT_FOR_ARCHS: armv6 armv7 i386 mips powerpc powerpcspe
- distinfo:
- TIMESTAMP = 1624667730
SHA256 (soedinglab-MMseqs2-13-45111_GH0.tar.gz) = 6444bb682ebf5ced54b2eda7a301fa3e933c2a28b7661f96ef5bdab1d53695a2
SIZE (soedinglab-MMseqs2-13-45111_GH0.tar.gz) = 10196433
No package information for this port in our database- Sometimes this happens. Not all ports have packages.
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- cmake : devel/cmake
- ninja : devel/ninja
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Library dependencies:
-
- libzstd.so : archivers/zstd
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_mmseqs2
- USES:
- cmake perl5 shebangfix
- pkg-message:
- For install:
-
MMseqs2 can benefit greatly from advanced CPU features such as AVX.
Consider setting additional optimizations such as -march=native (e.g.
in make.conf) and reinstalling from source via
cd ${PORTSDIR}/biology/mmseqs2 && make install
- Master Sites:
|
Number of commits found: 1
| Commit History - (may be incomplete: for full details, see links to repositories near top of page) |
| Commit | Credits | Log message |
|---|
13.45111_2
23 Jul 2022 16:41:44
 |
Yuri Victorovich (yuri) |
biology/mmseqs2: Not require OpenMP on systems where OpenMP isn't enabled
Reported by: fallout
Approved by: portmgr (blanket)
(cherry picked from commit 280dd32be2077538747444b606794ef6496ae092) |
Number of commits found: 1
|
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