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non port: biology/mothur/Makefile

Number of commits found: 18

Thursday, 28 Sep 2023
18:56 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/mothur: Remove CC/CPP/CXX exports

USES=llvm now by default exports CC/CPP/CXX so remove those
Approved by:	portmgr (blanket)
commit hash: db3d647fdea3f2208f0c84465b0194d7e5bf4904 commit hash: db3d647fdea3f2208f0c84465b0194d7e5bf4904 commit hash: db3d647fdea3f2208f0c84465b0194d7e5bf4904 commit hash: db3d647fdea3f2208f0c84465b0194d7e5bf4904 db3d647
Friday, 18 Aug 2023
06:57 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/mothur: Fix build on 14

Approved by:	portmgr (blanket)
Sponsored by:	The FreeBSD Foundation
commit hash: a5b5a22ade5713b3b2f9bddcb6fa95fe4aa51b9c commit hash: a5b5a22ade5713b3b2f9bddcb6fa95fe4aa51b9c commit hash: a5b5a22ade5713b3b2f9bddcb6fa95fe4aa51b9c commit hash: a5b5a22ade5713b3b2f9bddcb6fa95fe4aa51b9c a5b5a22
Tuesday, 15 Aug 2023
07:42 Yuri Victorovich (yuri) search for other commits by this committer
biology/mothur: Fix build with clang-16

Reported by:	fallout
commit hash: ec80eff163d354e6b456edf9bf1f14a40e82abca commit hash: ec80eff163d354e6b456edf9bf1f14a40e82abca commit hash: ec80eff163d354e6b456edf9bf1f14a40e82abca commit hash: ec80eff163d354e6b456edf9bf1f14a40e82abca ec80eff
Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Friday, 20 May 2022
02:10 Yuri Victorovich (yuri) search for other commits by this committer
biology/mothur: Update 1.47.0 -> 1.48.0

Reported by:	portscout
commit hash: a19ac12c2c4232afcb406301472531f035e6058d commit hash: a19ac12c2c4232afcb406301472531f035e6058d commit hash: a19ac12c2c4232afcb406301472531f035e6058d commit hash: a19ac12c2c4232afcb406301472531f035e6058d a19ac12
Friday, 21 Jan 2022
17:14 Yuri Victorovich (yuri) search for other commits by this committer
biology/mothur: Update 1.46.1 -> 1.47.0

Reported by:	portscout
commit hash: d6021375f3358d44caf7929042dc1c0cf6292726 commit hash: d6021375f3358d44caf7929042dc1c0cf6292726 commit hash: d6021375f3358d44caf7929042dc1c0cf6292726 commit hash: d6021375f3358d44caf7929042dc1c0cf6292726 d602137
Thursday, 2 Sep 2021
09:29 Yuri Victorovich (yuri) search for other commits by this committer
biology/mothur: Update 1.46.0 -> 1.46.1

Reported by:	portscout
commit hash: 03cb17ef46adf1223603a06606c79c8b7fb98f42 commit hash: 03cb17ef46adf1223603a06606c79c8b7fb98f42 commit hash: 03cb17ef46adf1223603a06606c79c8b7fb98f42 commit hash: 03cb17ef46adf1223603a06606c79c8b7fb98f42 03cb17e
Thursday, 26 Aug 2021
17:45 Yuri Victorovich (yuri) search for other commits by this committer
biology/mothur: Update 1.45.3 -> 1.46.0

Reported by:	portscout
commit hash: 2c2bb694d2eb99085eedcb2d93b69d601ba2a36f commit hash: 2c2bb694d2eb99085eedcb2d93b69d601ba2a36f commit hash: 2c2bb694d2eb99085eedcb2d93b69d601ba2a36f commit hash: 2c2bb694d2eb99085eedcb2d93b69d601ba2a36f 2c2bb69
Sunday, 9 May 2021
16:11 Yuri Victorovich (yuri) search for other commits by this committer
biology/mothur: Update 1.45.2 -> 1.45.3

Reported by:	portscout
commit hash: 4e8265c62483e7ac9bd87f401fd318418d8b2a86 commit hash: 4e8265c62483e7ac9bd87f401fd318418d8b2a86 commit hash: 4e8265c62483e7ac9bd87f401fd318418d8b2a86 commit hash: 4e8265c62483e7ac9bd87f401fd318418d8b2a86 4e8265c
Tuesday, 13 Apr 2021
00:29 Jason W. Bacon (jwb) search for other commits by this committer
biology/mothur: Update to 1.45.2

Numerous bug fixes and enhancements since 1.43.0

Approved by:    yuri
commit hash: fd20bf82b699c91e1ddc0b92ddc98b038483c706 commit hash: fd20bf82b699c91e1ddc0b92ddc98b038483c706 commit hash: fd20bf82b699c91e1ddc0b92ddc98b038483c706 commit hash: fd20bf82b699c91e1ddc0b92ddc98b038483c706 fd20bf8
Wednesday, 7 Apr 2021
08:09 Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c cf118cc
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Saturday, 5 Oct 2019
17:04 yuri search for other commits by this committer
biology/mothur: Update 1.42.3 -> 1.43.0

Reported by:	portscout
Original commitRevision:513838 
Friday, 26 Jul 2019
20:46 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Original commitRevision:507372 
Friday, 28 Jun 2019
04:02 yuri search for other commits by this committer
biology/mothur: Update 1.42.2 -> 1.42.3

Reported by:	portscout
Original commitRevision:505257 
Wednesday, 19 Jun 2019
23:54 yuri search for other commits by this committer
biology/mothur: Update 1.42.1-3 -> 1.42.2
Original commitRevision:504606 
Monday, 20 May 2019
21:20 yuri search for other commits by this committer
biology/mothur: Add USES=compiler:c++11-lang
Original commitRevision:502174 
17:59 yuri search for other commits by this committer
New port: biology/mothur: Software for bioinformatics of the microbial ecology
community
Original commitRevision:502128 

Number of commits found: 18