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Two new features were added on 2020-05-30:
  1. Repology links - each port now has a link to repology.org. See issue 148 for details.
  2. Ports I maintain report - port maintainers can now subscribe to a daily report of commits to the ports they maintain. See Watch ports I maintain at Report Subscriptions. Details at issue 138
non port: biology/muscle/Makefile
SVNWeb

Number of commits found XX: 13

Fri, 17 Jan 2020
[ 16:49 fernape ] Original commit   Revision:523339
523339 biology/muscle/Makefile
biology/muscle: unbreak in -CURRENT

Don't compile problematic (and unnecessary) file.

PR:	243206
Submitted by:	mzaki@e-mail.ne.jp (maintainer)
Mon, 13 Jan 2020
[ 17:42 fernape ] Original commit   Revision:522911
522911 biology/muscle/Makefile
522911 biology/muscle/distinfo
522911 biology/muscle/files/patch-Makefile
522911 biology/muscle/files/patch-globalslinux.cpp
522911 biology/muscle/files/patch-mk
biology/muscle: update to 3.8.1551

 * Bug fix for long sequences.
 * Unbreak '/dev/tty' problem during a build
 * Update maintainer's mail address

PR:	243206
Submitted by:	mzaki@e-mail.ne.jp (maintainer)
Fri, 11 Nov 2016
[ 09:31 linimon ] Original commit   Revision:425879
425879 benchmarks/libmicro/Makefile
425879 benchmarks/nosqlbench/Makefile
425879 biology/jellyfish/Makefile
425879 biology/muscle/Makefile
425879 biology/p5-AcePerl/Makefile
425879 biology/plinkseq/Makefile
425879 science/gchemutils/Makefile
425879 science/simlib/Makefile
Mark various leaf ports broken on aarch64, and, where appropriate, other
tier-2 archs.

Approved by:	portmgr (tier-2 blanket)
Sun, 13 Dec 2015
[ 16:07 swills ] Original commit   Revision:403676
403676 astro/boinc-setiathome-v7/Makefile
403676 audio/ardour/Makefile
403676 audio/audacity/Makefile
403676 audio/beast/Makefile
403676 audio/bristol/Makefile
403676 audio/csound/Makefile
403676 audio/festival/Makefile
403676 audio/funktrackergold/Makefile
403676 audio/gnuspeechsa/Makefile
403676 audio/idjc/Makefile

(Only the first 10 of 26 ports in this commit are shown above. View all ports for this commit)
mark some of the ports that don't build on powerpc64 for me
Tue, 17 Jun 2014
[ 21:36 rakuco ] Original commit   Revision:358182
358182 biology/muscle/Makefile
358182 biology/muscle/distinfo
358182 biology/muscle/files/patch-Makefile
358182 biology/muscle/files/patch-intmath.cpp
358182 biology/muscle/files/patch-mk
Update to 3.8.31.

PR:		191130
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
Sun, 1 Jun 2014
[ 11:05 ohauer ] Original commit   Revision:356095
356095 biology/muscle/Makefile
- add stage support
Mon, 26 May 2014
[ 06:55 bapt ] Original commit   Revision:355278
355278 astro/gpstk/Makefile
355278 biology/muscle/Makefile
355278 cad/meshdev/Makefile
355278 cad/openvsp/Makefile
355278 chinese/phpbb-tw/Makefile
355278 comms/openobex/Makefile
355278 comms/usrp/Makefile
355278 converters/p5-WAP-wbxml/Makefile
355278 databases/gigabase/Makefile
355278 deskutils/myitcrm/Makefile

(Only the first 10 of 19 ports in this commit are shown above. View all ports for this commit)
Convert to USES=dos2unix

With hat:	portmgr
Thu, 13 Mar 2014
[ 07:41 miwi ] Original commit   Revision:348042
348042 biology/garlic/Makefile
348042 biology/mafft/Makefile
348042 biology/mopac/Makefile
348042 biology/mummer/Makefile
348042 biology/muscle/Makefile
348042 biology/paml/Makefile
348042 biology/phylip/Makefile
348042 biology/pymol/Makefile
348042 biology/velvet/Makefile
348042 biology/xmolwt/Makefile
- Convert USE_GMAKE to USES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Tue, 24 Jul 2012
[ 07:19 cs ] Original commit 
301441 audio/rioutil/Makefile
301441 biology/muscle/Makefile
301441 chinese/gimp-help-zh_CN/Makefile
301441 comms/cwdaemon/Makefile
301441 comms/ebook2cw/Makefile
301441 converters/osm2mp/Makefile
301441 converters/p5-Convert-Bencode/Makefile
301441 converters/p5-String-SetUTF8/Makefile
301441 converters/p5-Unicode-IMAPUtf7/Makefile
301441 converters/p5-Unicode-UTF8simple/Makefile

(Only the first 10 of 30 ports in this commit are shown above. View all ports for this commit)
Fix typos in COMMENT
Sat, 17 May 2008
[ 16:52 pav ] Original commit 
1.2 biology/mrbayes/Makefile
1.3 biology/muscle/Makefile
1.2 biology/njplot/Makefile
- Update maintainer's email address

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
[ 16:50 pav ] Original commit 
1.2 biology/muscle/Makefile
- Try to fix fetch

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
Wed, 14 May 2008
[ 13:51 pav ] Original commit 
1.96 biology/Makefile
1.1 biology/muscle/Makefile
1.1 biology/muscle/distinfo
1.1 biology/muscle/files/patch-Makefile
1.1 biology/muscle/files/patch-globalslinux.cpp
1.1 biology/muscle/files/patch-intmath.cpp
1.1 biology/muscle/pkg-descr
MUSCLE is multiple alignment software for protein and nucleotide sequences.
The name stands for multiple sequence comparison by log-expectation.

A range of options is provided that give you the choice of optimizing
accuracy, speed, or some compromise between the two. Default parameters are
those that give the best average accuracy in the published tests. MUSCLE
can achieve both better average accuracy and better speed than CLUSTALW or
T-Coffee, depending on the chosen options.

Citation:

Edgar, R. C. (2004) MUSCLE: multiple sequence alignment with high accuracy
and high throughput. Nucleic Acids Research 32(5): 1792-1797.

Edgar, R. C. (2004) MUSCLE: a multiple sequence alignment method with
reduced time and space complexity. BMC Bioinformatics 5(1): 113.

The NAR paper gives only a brief overview of the algorithm and
implementation details. For a full discussion of the method and many of
the non-default options that it offers, please see the BMC paper.

WWW: http://www.drive5.com/muscle/

PR:             ports/118460
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found XX: 13

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