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Current status

The server has been repaired, with a new power supply, for $23. I am waiting for lower COVID rates before visiting the datacenter to return it.
non port: biology/muscle/Makefile
SVNWeb

Number of commits found: 14

Tue, 6 Apr 2021
[ 14:31 mat (Mathieu Arnold) ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148 (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Fri, 17 Jan 2020
[ 16:49 fernape ] Original commit   Revision:523339
biology/muscle: unbreak in -CURRENT

Don't compile problematic (and unnecessary) file.

PR:	243206
Submitted by:	mzaki@e-mail.ne.jp (maintainer)
Mon, 13 Jan 2020
[ 17:42 fernape ] Original commit   Revision:522911
biology/muscle: update to 3.8.1551

 * Bug fix for long sequences.
 * Unbreak '/dev/tty' problem during a build
 * Update maintainer's mail address

PR:	243206
Submitted by:	mzaki@e-mail.ne.jp (maintainer)
Fri, 11 Nov 2016
[ 09:31 linimon ] Original commit   Revision:425879
Mark various leaf ports broken on aarch64, and, where appropriate, other
tier-2 archs.

Approved by:	portmgr (tier-2 blanket)
Sun, 13 Dec 2015
[ 16:07 swills ] Original commit   Revision:403676(Only the first 10 of 26 ports in this commit are shown above. View all ports for this commit)
mark some of the ports that don't build on powerpc64 for me
Tue, 17 Jun 2014
[ 21:36 rakuco ] Original commit   Revision:358182
Update to 3.8.31.

PR:		191130
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
Sun, 1 Jun 2014
[ 11:05 ohauer ] Original commit   Revision:356095
- add stage support
Mon, 26 May 2014
[ 06:55 bapt ] Original commit   Revision:355278(Only the first 10 of 19 ports in this commit are shown above. View all ports for this commit)
Convert to USES=dos2unix

With hat:	portmgr
Thu, 13 Mar 2014
[ 07:41 miwi ] Original commit   Revision:348042
- Convert USE_GMAKE to USES
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Tue, 24 Jul 2012
[ 07:19 cs ] Original commit (Only the first 10 of 30 ports in this commit are shown above. View all ports for this commit)
Fix typos in COMMENT
Sat, 17 May 2008
[ 16:52 pav ] Original commit 
- Update maintainer's email address

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
[ 16:50 pav ] Original commit 
- Try to fix fetch

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)
Wed, 14 May 2008
[ 13:51 pav ] Original commit 
MUSCLE is multiple alignment software for protein and nucleotide sequences.
The name stands for multiple sequence comparison by log-expectation.

A range of options is provided that give you the choice of optimizing
accuracy, speed, or some compromise between the two. Default parameters are
those that give the best average accuracy in the published tests. MUSCLE
can achieve both better average accuracy and better speed than CLUSTALW or
T-Coffee, depending on the chosen options.

Citation:

Edgar, R. C. (2004) MUSCLE: multiple sequence alignment with high accuracy
and high throughput. Nucleic Acids Research 32(5): 1792-1797.

Edgar, R. C. (2004) MUSCLE: a multiple sequence alignment method with
reduced time and space complexity. BMC Bioinformatics 5(1): 113.

The NAR paper gives only a brief overview of the algorithm and
implementation details. For a full discussion of the method and many of
the non-default options that it offers, please see the BMC paper.

WWW: http://www.drive5.com/muscle/

PR:             ports/118460
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 14