FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us
Blog
Twitter

We also have a status page: https://freshports.wordpress.com/

non port: biology/muscle/files/patch-Makefile
SVNWeb

Number of commits found: 2

Tue, 17 Jun 2014
[ 21:36 rakuco ] Original commit   Revision:358182
358182 biology/muscle/Makefile
358182 biology/muscle/distinfo
358182 biology/muscle/files/patch-Makefile
358182 biology/muscle/files/patch-intmath.cpp
358182 biology/muscle/files/patch-mk
Update to 3.8.31.

PR:		191130
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
Wed, 14 May 2008
[ 13:51 pav ] Original commit 
1.96 biology/Makefile
1.1 biology/muscle/Makefile
1.1 biology/muscle/distinfo
1.1 biology/muscle/files/patch-Makefile
1.1 biology/muscle/files/patch-globalslinux.cpp
1.1 biology/muscle/files/patch-intmath.cpp
1.1 biology/muscle/pkg-descr
MUSCLE is multiple alignment software for protein and nucleotide sequences.
The name stands for multiple sequence comparison by log-expectation.

A range of options is provided that give you the choice of optimizing
accuracy, speed, or some compromise between the two. Default parameters are
those that give the best average accuracy in the published tests. MUSCLE
can achieve both better average accuracy and better speed than CLUSTALW or
T-Coffee, depending on the chosen options.

Citation:

Edgar, R. C. (2004) MUSCLE: multiple sequence alignment with high accuracy
and high throughput. Nucleic Acids Research 32(5): 1792-1797.

Edgar, R. C. (2004) MUSCLE: a multiple sequence alignment method with
reduced time and space complexity. BMC Bioinformatics 5(1): 113.

The NAR paper gives only a brief overview of the algorithm and
implementation details. For a full discussion of the method and many of
the non-default options that it offers, please see the BMC paper.

WWW: http://www.drive5.com/muscle/

PR:             ports/118460
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>

Number of commits found: 2

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Forums
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
libXcursorDec 17
libXfont2Dec 17
libXfont2Dec 17
globalDec 16
jenkinsDec 15
jenkins-ltsDec 15
gitlabDec 14
nodeDec 14
node4Dec 14
node6Dec 14
node8Dec 14
torDec 14
asterisk13Dec 13
asterisk13*Dec 13
asterisk13*Dec 13

18 vulnerabilities affecting 90 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2017-12-17 18:50:28


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 32140
Broken 124
Deprecated 48
Ignore 360
Forbidden 0
Restricted 173
No CDROM 77
Vulnerable 41
Expired 10
Set to expire 40
Interactive 0
new 24 hours 2
new 48 hours11
new 7 days33
new fortnight108
new month42951

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2017 Dan Langille. All rights reserved.