Port details on branch 2022Q3 |
- ncbi-blast+ NCBI implementation of Basic Local Alignment Search Tool
- 2.14.1_3 biology =1 2.14.1_1Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2014-12-30 20:03:26
- Last Update: 2024-03-09 14:05:20
- Commit Hash: 1947368
- People watching this port, also watch:: cytoscape, openjdk8, tmux, xen-kernel, python311
- Also Listed In: perl5 python
- License: PD
- WWW:
- https://blast.ncbi.nlm.nih.gov
- Description:
- The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity
between sequences. The program compares nucleotide or protein sequences to
sequence databases and calculates the statistical significance of matches.
BLAST can be used to infer functional and evolutionary relationships between
sequences as well as help identify members of gene families.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- ncbi-blast+>0:biology/ncbi-blast+
- Conflicts:
- CONFLICTS_INSTALL:
- Conflicts Matches:
-
There are no Conflicts Matches for this port. This is usually an error.
- To install the port:
- cd /usr/ports/biology/ncbi-blast+/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/ncbi-blast+
- pkg install ncbi-blast+
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: ncbi-blast+
- Flavors: there is no flavor information for this port.
- ONLY_FOR_ARCHS: aarch64 amd64 powerpc64 powerpc64le riscv64
- distinfo:
- TIMESTAMP = 1692973880
SHA256 (ncbi-blast-2.14.1+-src.tar.gz) = 712c2dbdf0fb13cc1c2d4f4ef5dd1ce4b06c3b57e96dfea8f23e6e99f5b1650e
SIZE (ncbi-blast-2.14.1+-src.tar.gz) = 28258487
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.4.1 : devel/gmake
- python3.9 : lang/python39
- perl5>=5.36<5.37 : lang/perl5.36
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- p5-List-MoreUtils>=0 : lang/p5-List-MoreUtils
- p5-JSON>=0 : converters/p5-JSON
- python3.9 : lang/python39
- perl5>=5.36<5.37 : lang/perl5.36
- Library dependencies:
-
- libpcre.so : devel/pcre
- liblmdb.so : databases/lmdb
- liblzo2.so : archivers/lzo2
- libgnutls.so : security/gnutls
- libtspi.so : security/trousers
- libgmp.so : math/gmp
- libidn2.so : dns/libidn2
- libnettle.so : security/nettle
- libhogweed.so : security/nettle
- libtasn1.so : security/libtasn1
- libp11-kit.so : security/p11-kit
- libgcrypt.so : security/libgcrypt
- libgpg-error.so : security/libgpg-error
- libsqlite3.so : databases/sqlite3
- libuv.so : devel/libuv
- libnghttp2.so : www/libnghttp2
- libgrpc.so : devel/grpc
- libzstd.so : archivers/zstd
- libdw.so : devel/elfutils
- This port is required by:
- for Run
-
- biology/biostar-tools
Configuration Options:
- No options to configure
- Options name:
- biology_ncbi-blast+
- USES:
- compiler:c++14-lang gmake localbase:ldflags shebangfix perl5 python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|