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Port details on branch 2022Q3
ncbi-cxx-toolkit NCBI C++ Toolkit
26.0.1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 26.0.1Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2022-08-14 01:21:34
Last Update: 2022-08-06 23:29:45
Commit Hash: 574ff140
Also Listed In: devel science
License: PD
WWW:
https://ncbi.github.io/cxx-toolkit/
Description:
NCBI C++ Toolkit provides free, portable, public domain libraries with no restrictions use. It has been written in the National Center for Biotechnology Information in Bethesda, MD. It is vaguely a successor, or a new generation of biology/ncbi-toolkit. It contains: * Networking and Interprocess Communication (IPC) library * MultiThreading Library * CGI and Fast-CGI Library, HTML Generation Library * SQL Database Access Library, C++ wrapper library for BerkeleyDB * C++ IOSTREAM Adaptor/Wrapper Library * GZIP and BZ2 C++ Wrapper Library with IOSTREAM adaptors * ASN.1 and XML Serialization Library with C++ Code Generator Tool (datatool) * Date and Time Library * File System Function Library * Command-Line Argument, Configuration and Environment Processing Library * Sequence Alignment Algorithms Library * BLAST Engine Library * Biological Sequences Retrieval and Processing Library * Portable FLTK and OpenGL based GUI and graphic libraries * XmlWrapp (XML parsing and handling, XSLT, XPath) WWW: https://ncbi.github.io/cxx-toolkit/
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (3 items)
Collapse this list.
  1. /usr/local/share/licenses/ncbi-cxx-toolkit-26.0.1/catalog.mk
  2. /usr/local/share/licenses/ncbi-cxx-toolkit-26.0.1/LICENSE
  3. /usr/local/share/licenses/ncbi-cxx-toolkit-26.0.1/PD
Collapse this list.
Dependency lines:
  • ncbi-cxx-toolkit>0:biology/ncbi-cxx-toolkit
Conflicts:
CONFLICTS_INSTALL:
  • dakota
  • libxdiff
  • ncbi-blast+
  • ncbi-toolkit
  • proj
  • py*-speedtest-cli
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port:
cd /usr/ports/biology/ncbi-cxx-toolkit/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/ncbi-cxx-toolkit
  • pkg install ncbi-cxx-toolkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: ncbi-cxx-toolkit
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1643225773 SHA256 (ncbi-ncbi-cxx-toolkit-public-release-26.0.1_GH0.tar.gz) = aba79da5c8d0407ffc92b7831f4f8f8a8096a15e47a016ada81b6568f9d280cc SIZE (ncbi-ncbi-cxx-toolkit-public-release-26.0.1_GH0.tar.gz) = 103933829
No package information for this port in our database
Sometimes this happens. Not all ports have packages.
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. gmake>=4.3 : devel/gmake
  2. python3.9 : lang/python39
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
  4. x11.pc : x11/libX11
  5. xpm.pc : x11/libXpm
Runtime dependencies:
  1. bash : shells/bash
  2. python3.9 : lang/python39
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
  4. x11.pc : x11/libX11
  5. xpm.pc : x11/libXpm
Library dependencies:
  1. libcdd.so : math/cddlib
  2. liblmdb.so : databases/lmdb
  3. libpcre.so : devel/pcre
  4. libmysqlclient.so.20 : databases/mysql57-client
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_ncbi-cxx-toolkit
USES:
compiler:c++17-lang gmake mysql perl5 python shebangfix ssl xorg
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/ncbi/ncbi-cxx-toolkit-public/tar.gz/release-26.0.1?dummy=/
Collapse this list.

Number of commits found: 1

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
26.0.1
06 Aug 2022 23:29:45
commit hash: 574ff140e31701841b5bfc3c9b8eecd9079a6e54commit hash: 574ff140e31701841b5bfc3c9b8eecd9079a6e54commit hash: 574ff140e31701841b5bfc3c9b8eecd9079a6e54commit hash: 574ff140e31701841b5bfc3c9b8eecd9079a6e54 files touched by this commit		 Yuri Victorovich (yuri) search for other commits by this committer 
biology/ncbi-cxx-toolkit: Broken on armv6

Reported by:	fallout

(cherry picked from commit 183ec5cd65c000e21aa59f9b569362b0f296fb57)

Number of commits found: 1
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