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Port details on branch 2022Q3
ncbi-entrez-direct Access to the NCBI's suite of interconnected databases
14.9.20210423_20 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 14.9.20210423_20Version of this port present on the latest quarterly branch.
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2021-04-24 23:42:15
Last Update: 2024-04-15 08:20:04
Commit Hash: 32b2846
Also Listed In: perl5
License: PD
WWW:
https://www.ncbi.nlm.nih.gov/books/NBK179288/
Description:
Entrez Direct (EDirect) provides access to the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb - no subversion history for this port

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (65 items)
Collapse this list.
  1. /usr/local/share/licenses/ncbi-entrez-direct-14.9.20210423_20/catalog.mk
  2. /usr/local/share/licenses/ncbi-entrez-direct-14.9.20210423_20/LICENSE
  3. /usr/local/share/licenses/ncbi-entrez-direct-14.9.20210423_20/PD
  4. bin/accn-at-a-time
  5. bin/align-columns
  6. bin/amino-acid-composition
  7. bin/archive-pubmed
  8. bin/between-two-genes
  9. bin/download-ncbi-data
  10. bin/download-pubmed
  11. bin/download-sequence
  12. bin/ecommon.sh
  13. bin/edirect.pl
  14. bin/efetch
  15. bin/efilter
  16. bin/einfo
  17. bin/elink
  18. bin/epost
  19. bin/esample
  20. bin/esearch
  21. bin/esummary
  22. bin/exclude-uid-lists
  23. bin/expand-current
  24. bin/fetch-pubmed
  25. bin/filter-stop-words
  26. bin/gbf2xml
  27. bin/hgvs2spdi
  28. bin/hlp-xtract.txt
  29. bin/index-extras
  30. bin/index-pubmed
  31. bin/intersect-uid-lists
  32. bin/join-into-groups-of
  33. bin/nquire
  34. bin/phrase-search
  35. bin/pm-collect
  36. bin/pm-index
  37. bin/pm-invert
  38. bin/pm-merge
  39. bin/pm-prepare
  40. bin/pm-promote
  41. bin/pm-refresh
  42. bin/pm-stash
  43. bin/print-columns
  44. bin/rchive
  45. bin/rchive.FreeBSD
  46. bin/reorder-columns
  47. bin/run-ncbi-converter
  48. bin/skip-if-file-exists
  49. bin/sort-table
  50. bin/sort-uniq-count
  51. bin/sort-uniq-count-rank
  52. bin/stream-pubmed
  53. bin/test-edirect
  54. bin/theme-aliases
  55. bin/transmute
  56. bin/transmute.FreeBSD
  57. bin/word-at-a-time
  58. bin/xml2json
  59. bin/xml2tbl
  60. bin/xtract
  61. bin/xtract.FreeBSD
  62. bin/xy-plot
  63. @owner
  64. @group
  65. @mode
Collapse this list.
Dependency lines:
  • ncbi-entrez-direct>0:biology/ncbi-entrez-direct
Conflicts:
CONFLICTS_INSTALL:
  • ebook-tools
  • p5-XML-Compile
Conflicts Matches:
There are no Conflicts Matches for this port. This is usually an error.
To install the port:
cd /usr/ports/biology/ncbi-entrez-direct/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/ncbi-entrez-direct
  • pkg install ncbi-entrez-direct
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: ncbi-entrez-direct
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1678294976 SHA256 (edirect-14.9.20210423/edirect.tar.gz) = 9d6534226164fc5dfae7abcf25bfdbd08db068b27f1c13b8a3c4681cda5b0cea SIZE (edirect-14.9.20210423/edirect.tar.gz) = 829737

Expand this list (20 items)

Collapse this list.

SHA256 (edirect-14.9.20210423/fatih-color-v1.10.0_GH0.tar.gz) = a00342a7ffb8b119346dce56e152a111cbb9eab3970c429cc2ed4272aec2858e SIZE (edirect-14.9.20210423/fatih-color-v1.10.0_GH0.tar.gz) = 1267532 SHA256 (edirect-14.9.20210423/surgebase-porter2-56e4718818e8_GH0.tar.gz) = d06994daa4d561c2ab477a7072bb7e40a8d39904c88ebf649a1b89105aabdf35 SIZE (edirect-14.9.20210423/surgebase-porter2-56e4718818e8_GH0.tar.gz) = 156593 SHA256 (edirect-14.9.20210423/gedex-inflector-16278e9db813_GH0.tar.gz) = d872f3fb5fcc8d8ff25e915670f7ce867a035cfd7a38a2e01ef1550f8770331b SIZE (edirect-14.9.20210423/gedex-inflector-16278e9db813_GH0.tar.gz) = 6784 SHA256 (edirect-14.9.20210423/klauspost-cpuid-v1.3.1_GH0.tar.gz) = 3bf2da7358c8ed33c05bac2ca733749ade03eadf184d81cc7b16fcbe2e230f1d SIZE (edirect-14.9.20210423/klauspost-cpuid-v1.3.1_GH0.tar.gz) = 367144 SHA256 (edirect-14.9.20210423/pbnjay-memory-b12e5d931931_GH0.tar.gz) = 8903a451771edca578c2aa09848f23027dc02df2c67f675f4dd1aae257a71ad6 SIZE (edirect-14.9.20210423/pbnjay-memory-b12e5d931931_GH0.tar.gz) = 3076 SHA256 (edirect-14.9.20210423/mattn-go-colorable-v0.1.8_GH0.tar.gz) = 1027954f9abbe06b6e117e3047af70204dd0eb4f8c27fcd459fb2574b279755f SIZE (edirect-14.9.20210423/mattn-go-colorable-v0.1.8_GH0.tar.gz) = 9571 SHA256 (edirect-14.9.20210423/mattn-go-isatty-v0.0.12_GH0.tar.gz) = addbdc341d7685ed4cc8d2d8a8fd2bd9b784bde00d0ea99fb251039fc10c611c SIZE (edirect-14.9.20210423/mattn-go-isatty-v0.0.12_GH0.tar.gz) = 4548 SHA256 (edirect-14.9.20210423/fiam-gounidecode-8deddbd03fec_GH0.tar.gz) = b763f4eb0d0f130821b52484565b32bae1585c4cb0edc57adb94f13b67765176 SIZE (edirect-14.9.20210423/fiam-gounidecode-8deddbd03fec_GH0.tar.gz) = 190666 SHA256 (edirect-14.9.20210423/golang-text-v0.3.5_GH0.tar.gz) = f85d1185ba116cd40ef8cf702fe1d960ed41d039c08fd314dbeb5866f3166f27 SIZE (edirect-14.9.20210423/golang-text-v0.3.5_GH0.tar.gz) = 8348127 SHA256 (edirect-14.9.20210423/golang-sys-v0.5.0_GH0.tar.gz) = 810c8f1b7704674971ab6b2b614aba20a5a1765018fd2c639f528dbbcbf88b1f SIZE (edirect-14.9.20210423/golang-sys-v0.5.0_GH0.tar.gz) = 1429723

Collapse this list.

Packages (timestamps in pop-ups are UTC):
ncbi-entrez-direct
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest14.9.20210423_1914.9.20210423_20-14.9.20210423_1914.9.20210423_20---
FreeBSD:13:quarterly14.9.20210423_1914.9.20210423_20-14.9.20210423_1914.9.20210423_20---
FreeBSD:14:latest14.9.20210423_1914.9.20210423_20-14.9.20210423_1914.9.20210423_20---
FreeBSD:14:quarterly14.9.20210423_1714.9.20210423_20-14.9.20210423_1714.9.20210423_20---
FreeBSD:15:latest14.9.20210423_1814.9.20210423_20n/a14.9.20210423_18n/a---
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bash : shells/bash
  2. go121 : lang/go121
  3. perl5>=5.36<5.37 : lang/perl5.36
Runtime dependencies:
  1. p5-libwww>=0 : www/p5-libwww
  2. p5-LWP-Protocol-https>=0 : www/p5-LWP-Protocol-https
  3. p5-XML-Simple>=0 : textproc/p5-XML-Simple
  4. curl : ftp/curl
  5. perl5>=5.36<5.37 : lang/perl5.36
This port is required by:
for Run
  1. biology/biostar-tools
Configuration Options:
No options to configure
Options name:
biology_ncbi-entrez-direct
USES:
go:modules perl5 shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/14.9.20210423/
Collapse this list.

There are no commits on branch 2022Q3 for this port
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