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non port: biology/ncbi-entrez-direct/Makefile

Number of commits found: 24

Sunday, 11 Feb 2024
10:39 Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update

PR:		276530
commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291 commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291 commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291 commit hash: 7e5aa2085f48d71be003c8ff0377bde837467291 7e5aa20
Thursday, 7 Dec 2023
02:22 Ashish SHUKLA (ashish) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update

PR:		274405
commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609 commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609 commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609 commit hash: 0505b712df3ae2b4bcaba00aecc7c1e9100d8609 0505b71
Friday, 8 Sep 2023
14:34 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go* update
commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3 commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3 commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3 commit hash: 8e4bc57934f0611f59a2bfca1ddbab781572ead3 8e4bc57
Friday, 4 Aug 2023
14:24 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
commit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fc commit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fc commit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fc commit hash: 09b993031a3b38ba8c33639ca40c1e3d69de67fc 09b9930
Saturday, 8 Apr 2023
15:13 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912 commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912 commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912 commit hash: ff40d94c1d2c808f3b54fad0e0a0a18dd9c62912 ff40d94
Saturday, 11 Mar 2023
08:34 Robert Clausecker (fuz) search for other commits by this committer
biology/ncbi-entrez-direct: fix build on riscv64

Bump golang.org/x/sys dependency to a version new
enough to build on riscv64-freebsd.

Sponsored by:	Berliner Linux User Group e.V.
Approved by:	portmgr (build fix blanket)
Differential Revision: https://reviews.freebsd.org/D38996
commit hash: 8ede8da5f192ec5f79b5b26094d11e6a66ff0c5b commit hash: 8ede8da5f192ec5f79b5b26094d11e6a66ff0c5b commit hash: 8ede8da5f192ec5f79b5b26094d11e6a66ff0c5b commit hash: 8ede8da5f192ec5f79b5b26094d11e6a66ff0c5b 8ede8da
Thursday, 9 Mar 2023
19:18 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after Go ports update
commit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93d commit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93d commit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93d commit hash: 09079730e9ca1d59129935a6046cbb7ee5e4a93d 0907973
Wednesday, 15 Feb 2023
19:06 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{119,120} update
commit hash: 56b5ec772f679a600dabe41622c1350594628286 commit hash: 56b5ec772f679a600dabe41622c1350594628286 commit hash: 56b5ec772f679a600dabe41622c1350594628286 commit hash: 56b5ec772f679a600dabe41622c1350594628286 56b5ec7
Thursday, 9 Feb 2023
21:55 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after GO_DEFAULT update.
commit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0d commit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0d commit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0d commit hash: 2297efc51b0f75d25389b742048fb7e9b2d96f0d 2297efc
Saturday, 14 Jan 2023
11:31 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTVERSION after lang/go{118,119} update
commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6 commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6 commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6 commit hash: 3b383d833aadb5e3e89d8ee3db1fef37ac239af6 3b383d8
Sunday, 11 Dec 2022
11:17 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
commit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2a commit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2a commit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2a commit hash: d9ad1002d517a618a299e45ae70075f2cfc66d2a d9ad100
Thursday, 6 Oct 2022
19:24 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3 commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3 commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3 commit hash: bde51869ee0206eeaa2849d8ef28b14da59727a3 bde5186
Thursday, 8 Sep 2022
16:33 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{118,119} update
commit hash: f05c98fffb232735c05ba30d43fb279085b813d7 commit hash: f05c98fffb232735c05ba30d43fb279085b813d7 commit hash: f05c98fffb232735c05ba30d43fb279085b813d7 commit hash: f05c98fffb232735c05ba30d43fb279085b813d7 f05c98f
Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
10:26 Tobias C. Berner (tcberner) search for other commits by this committer
cleanup: remove trailing whitepaces
commit hash: b86221feeafaacbff38b27dd5999866460e3a67b commit hash: b86221feeafaacbff38b27dd5999866460e3a67b commit hash: b86221feeafaacbff38b27dd5999866460e3a67b commit hash: b86221feeafaacbff38b27dd5999866460e3a67b b86221f
Wednesday, 3 Aug 2022
21:35 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after Go update

Bump Go ports PORTREVISION after GO_DEFAULT and lang/go118 update.
commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24 commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24 commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24 commit hash: 4476f89764d3ee73d216c2d56df149e8d4c62c24 4476f89
Thursday, 14 Jul 2022
12:46 Dmitri Goutnik (dmgk) search for other commits by this committer
all: Bump PORTREVISION after lang/go{117,118} update
commit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5a commit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5a commit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5a commit hash: 153cb65ac8a05356245dd09d1ff48c2a6afafc5a 153cb65
Tuesday, 7 Jun 2022
21:56 Dmitri Goutnik (dmgk) search for other commits by this committer
*/*: Bump port revisons after lang/go{117,118} update
commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35 commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35 commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35 commit hash: 309cdeccd802bb370a42e80cc4468da17c8dab35 309cdec
Monday, 6 Jun 2022
18:19 Dmitri Goutnik (dmgk) search for other commits by this committer
*/*: Repair after switching to versioned Go ports

- Add 1.17 to USES=go for ports that still need go117, remove GO_PORT;
- Add missing ${SETENV} ${MAKE_ENV} to repair BINARY_ALIAS;
- Remove explicit dependencies on lang/go.

PR:		264336
Reviewed by:	ygy jwb yuri mikael drtr0jan@yandex.ru decke mat
Differential Revision:	https://reviews.freebsd.org/D35346
commit hash: b16eb860cc492d498eea6df7f481c93bbc851167 commit hash: b16eb860cc492d498eea6df7f481c93bbc851167 commit hash: b16eb860cc492d498eea6df7f481c93bbc851167 commit hash: b16eb860cc492d498eea6df7f481c93bbc851167 b16eb86
Wednesday, 30 Mar 2022
07:01 Guangyuan Yang (ygy) search for other commits by this committer
*/*: Bump PORTREVISION after lang/go 1.18 update
commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653 commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653 commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653 commit hash: d690b5102f75bf70e3cfb280a84c9f3eaf4ec653 d690b51
Sunday, 6 Feb 2022
18:36 Stefan Eßer (se) search for other commits by this committer
Update CONFLICTS definitions in categories a* to c*

Update the CONFLICTS definitions of ports in the following categories:

- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters

An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.

There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.

Approved by:	portmgr (implicit)
commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e commit hash: bdd2d4af9630fdc1157d49bd193e8195c3240e9e bdd2d4a
Monday, 10 Jan 2022
15:15 Stefan Eßer (se) search for other commits by this committer
Fix CONFLICTS entries of multiple ports

There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.

This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.

Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port
cannot conflict with itself (due to logic in bsd.port.mk that
supresses the pattern match result in that case).

A few ports that set the conflicts variables depending on complex
conditions (e.g. port options), have been left unmodified, despite
probably containing outdated package names.

These changes should only affect the installation of locally built
ports, not the package building with poudriere. They should give an
early indication of the install conflict in cases where currently
the pkg command aborts an installation when it detects that an
existing file would be overwritten,

Approved by:	portmgr (implicit)
commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 bcaf25a
Monday, 26 Apr 2021
16:53 Jason W. Bacon (jwb) search for other commits by this committer
biology/ncbi-entrez-direct: Update to 14.9.20210423_1

A few fixes to pass upstream test script
commit hash: dd7bec77114786adf79d35c325337a59c9684848 commit hash: dd7bec77114786adf79d35c325337a59c9684848 commit hash: dd7bec77114786adf79d35c325337a59c9684848 commit hash: dd7bec77114786adf79d35c325337a59c9684848 dd7bec7
Saturday, 24 Apr 2021
23:40 Jason W. Bacon (jwb) search for other commits by this committer
biology/ncbi-entrez-direct: Access to the NCBI's interconnected databases

Entrez Direct (EDirect) provides access to the NCBI's suite of interconnected
databases (publication, sequence, structure, gene, variation, expression, etc.)
from a UNIX terminal window.
commit hash: ab50f8435a78a574ac5ce683004b078c5baf209d commit hash: ab50f8435a78a574ac5ce683004b078c5baf209d commit hash: ab50f8435a78a574ac5ce683004b078c5baf209d commit hash: ab50f8435a78a574ac5ce683004b078c5baf209d ab50f84

Number of commits found: 24