Port details on branch 2022Q3 |
- ncbi-toolkit NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
- 2017.01.06_9 biology =2 2017.01.06_8Version of this port present on the latest quarterly branch.
- Maintainer: yuri@FreeBSD.org
- Port Added: 2000-10-29 10:56:24
- Last Update: 2024-01-12 15:11:29
- Commit Hash: d432922
- People watching this port, also watch:: zip, pcre, desktop-file-utils, xorg-fonts-miscbitmaps, libIDL
- License: not specified in port
- WWW:
- https://www.ncbi.nlm.nih.gov/IEB/ToolBox/MainPage/index.html
- Description:
- The NCBI (National Center for Biotechnology Information) development toolkit,
containing various libraries needed by NCBI applications, as well as a
software suite containing, amongst other things, NCBI BLAST 2.0.
From the README:
The NCBI Software Development Toolkit was developed for the production and
distribution of GenBank, Entrez, BLAST, and related services by NCBI. We
make it freely available to the public without restriction to facilitate
the use of NCBI by the scientific community. However, please understand
that while we feel we have done a high quality job, this is not commercial
software.
The documentation lags considerably behind the software and we must make
any changes required by our data production needs. Nontheless, many people
have found it a useful and stable basis for a number of tools and
applications.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- ncbi-toolkit>0:biology/ncbi-toolkit
- Conflicts:
- CONFLICTS_INSTALL:
- Conflicts Matches:
-
There are no Conflicts Matches for this port. This is usually an error.
- To install the port:
- cd /usr/ports/biology/ncbi-toolkit/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/ncbi-toolkit
- pkg install ncbi-toolkit
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: ncbi-toolkit
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1538934016
SHA256 (ncbi-toolkit-2017.01.06/ncbi.tar.gz) = 4b88aaad8f953b1b50bc7d06f3a5920f0d589d2c9a26c709199f8347905f5867
SIZE (ncbi-toolkit-2017.01.06/ncbi.tar.gz) = 155731358
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gettext-runtime>=0.22_1 : devel/gettext-runtime
- x11.pc : x11/libX11
- xau.pc : x11/libXau
- xext.pc : x11/libXext
- xft.pc : x11-fonts/libXft
- xmu.pc : x11-toolkits/libXmu
- xrender.pc : x11/libXrender
- xt.pc : x11-toolkits/libXt
- xpm.pc : x11/libXpm
- Runtime dependencies:
-
- x11.pc : x11/libX11
- xau.pc : x11/libXau
- xext.pc : x11/libXext
- xft.pc : x11-fonts/libXft
- xmu.pc : x11-toolkits/libXmu
- xrender.pc : x11/libXrender
- xt.pc : x11-toolkits/libXt
- xpm.pc : x11/libXpm
- Library dependencies:
-
- libfontconfig.so : x11-fonts/fontconfig
- libgmp.so : math/gmp
- libgnutls.so : security/gnutls
- libhogweed.so : security/nettle
- libidn2.so : dns/libidn2
- libnettle.so : security/nettle
- libp11-kit.so : security/p11-kit
- libpng.so : graphics/png
- libtasn1.so : security/libtasn1
- libtspi.so : security/trousers
- libunistring.so : devel/libunistring
- libintl.so : devel/gettext-runtime
- libjpeg.so : graphics/jpeg-turbo
- libXm.so.4 : x11-toolkits/open-motif
- This port is required by:
- for Build
-
Deleted ports which required this port:
- * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options:
- ===> The following configuration options are available for ncbi-toolkit-2017.01.06_9:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- biology_ncbi-toolkit
- USES:
- gettext-runtime iconv jpeg motif xorg
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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