Port details on branch 2022Q3 |
- njplot Phylogenetic tree drawing program
- 2.4 biology
=1 2.4Version of this port present on the latest quarterly branch.
- Maintainer: jrm@FreeBSD.org
- Port Added: 2008-05-14 14:07:25
- Last Update: 2018-12-11 15:04:12
- SVN Revision: 487239
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- License: NONE
- WWW:
- http://pbil.univ-lyon1.fr/software/njplot.html
- Description:
- NJplot is a tree drawing program able to draw any phylogenetic tree expressed
in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP
package). NJplot is especially convenient for rooting the unrooted trees
obtained from parsimony, distance or maximum likelihood tree-building methods.
The package contains the following programs:
njplot - draw phylogenetic trees and interactively modify them
newicktops - non-interactive version rendering into a PostScript file
newicktotxt - non-interactive version rendering into a text file
unrooted - draw unrooted circular trees
If you use NJplot in a published work, please cite the following reference:
Perriere, G. and Gouy, M. (1996) WWW-Query: An on-line retrieval system for
biological sequence banks. Biochimie, 78, 364-369.
WWW: http://pbil.univ-lyon1.fr/software/njplot.html
-
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- Manual pages:
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- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
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- No installation instructions:
- This port has been deleted.
- PKGNAME: there is no package for this port: _LICENSE_RESTRICTED = delete-package delete-distfiles
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1479168824
SHA256 (njplot-2.4.tar.gz) = e470f7583691da2ad36a7cda4269bf64807f77cb27fe1e16cbfefc45942469d3
SIZE (njplot-2.4.tar.gz) = 83239
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- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- blastall : biology/ncbi-toolkit
- x11.pc : x11/libX11
- xmu.pc : x11-toolkits/libXmu
- xp.pc : x11/libXp
- xt.pc : x11-toolkits/libXt
- xpm.pc : x11/libXpm
- Runtime dependencies:
-
- x11.pc : x11/libX11
- xmu.pc : x11-toolkits/libXmu
- xp.pc : x11/libXp
- xt.pc : x11-toolkits/libXt
- xpm.pc : x11/libXpm
- Library dependencies:
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- libXm.so.4 : x11-toolkits/open-motif
- There are no ports dependent upon this port
Configuration Options:
- ===> The following configuration options are available for njplot-2.4:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- N/A
- USES:
- motif
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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