15:19 jrm 

biology/njplot: Add site in MASTER_SITES because package builders are
timing out during fetch.

Approved by:	AMDmi3 (mentor)
Differential Revision:	https://reviews.freebsd.org/D8651

 

14:52 jrm 

biology/njplot: Revive and update to version 2.4

Approved by:	AMDmi3 (mentor)
Differential Revision:	https://reviews.freebsd.org/D8518

 

19:35 antoine 

Deprecate ports broken for more than 6 months

 

17:55 bapt 

Mark as broken unfetchable ports

 

11:26 ohauer 

- add stage support
- add OPTION for X11
- bump PORTREVISION

 

13:35 ehaupt 

Remove trailing whitespaces from category biology

 

13:54 ehaupt 

According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)

 

15:46 adamw 

Convert biology to MDOCS and MEXAMPLES

 

18:05 bapt 

Fix NO_STAGE attribution

 

15:55 bapt 

Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)

 

07:33 bapt 

Convert from USE_MOTIF to USES=motif

 

12:44 makc 

Bump PORTREVISION after open-mofit update

15:33 amdmi3 

Convert most of remaining ports that depend on xorg-libraries to
modular xorg.

- supply corresponding USE_XORG for all imake-using ports that need it
- USE_IMAKE no longer implies USE_XLIB in absence of USE_XORG
- retire USE_X_PREFIX which is not really used anywhere after the
  above change
- a few minor nits like whitespace and SF macro

Tested by:      2 tinderbox runs by pav
Approved by:    portmgr (pav)

16:52 pav 

- Update maintainer's email address

Submitted by:   Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp> (maintainer)

14:07 pav 

NJplot is a tree drawing program able to draw any phylogenetic tree expressed
in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP
package). NJplot is especially convenient for rooting the unrooted trees
obtained from parsimony, distance or maximum likelihood tree-building methods.

The package contains the following programs:
njplot      - draw phylogenetic trees and interactively modify them
newicktops  - non-interactive version rendering into a PostScript file
newicktotxt - non-interactive version rendering into a text file
unrooted    - draw unrooted circular trees

If you use NJplot in a published work, please cite the following reference:

Perriere, G. and Gouy, M. (1996) WWW-Query: An on-line retrieval system for
biological sequence banks. Biochimie, 78, 364-369.

WWW: http://pbil.univ-lyon1.fr/software/njplot.html

PR:             ports/118438
Submitted by:   Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>