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Port details on branch 2022Q3
p5-Bio-ASN1-EntrezGene Regular expression-based Perl Parser for NCBI Entrez Gene
1.73_2,1 biology on this many watch lists=1 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 1.73_2,1Version of this port present on the latest quarterly branch.
Maintainer: sunpoet@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2005-10-15 20:11:03
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
People watching this port, also watch:: p5-Syntax-Highlight-Perl-Improved, py39-biopython, p5-XML-DOM-XPath
Also Listed In: perl5
License: ART10 GPLv1+
WWW:
https://metacpan.org/release/Bio-ASN1-EntrezGene
Description:
Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI Entrez Gene genome databases [1]. It parses an ASN.1-formatted Entrez Gene record and returns a data structure that contains all data items from the gene record. [1] http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene The parser will report error & line number if input data does not conform to the NCBI Entrez Gene genome annotation file format.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (17 items)
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  1. /usr/local/share/licenses/p5-Bio-ASN1-EntrezGene-1.73_2,1/catalog.mk
  2. /usr/local/share/licenses/p5-Bio-ASN1-EntrezGene-1.73_2,1/LICENSE
  3. /usr/local/share/licenses/p5-Bio-ASN1-EntrezGene-1.73_2,1/ART10
  4. /usr/local/share/licenses/p5-Bio-ASN1-EntrezGene-1.73_2,1/GPLv1+
  5. lib/perl5/site_perl/Bio/ASN1/EntrezGene.pm
  6. lib/perl5/site_perl/Bio/ASN1/EntrezGene/Indexer.pm
  7. lib/perl5/site_perl/Bio/ASN1/Sequence.pm
  8. lib/perl5/site_perl/Bio/ASN1/Sequence/Indexer.pm
  9. lib/perl5/site_perl/Bio/SeqIO/entrezgene.pm
  10. lib/perl5/site_perl/man/man3/Bio::ASN1::EntrezGene.3.gz
  11. lib/perl5/site_perl/man/man3/Bio::ASN1::EntrezGene::Indexer.3.gz
  12. lib/perl5/site_perl/man/man3/Bio::ASN1::Sequence.3.gz
  13. lib/perl5/site_perl/man/man3/Bio::ASN1::Sequence::Indexer.3.gz
  14. lib/perl5/site_perl/man/man3/Bio::SeqIO::entrezgene.3.gz
  15. @owner
  16. @group
  17. @mode
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Dependency lines:
  • p5-Bio-ASN1-EntrezGene>0:biology/p5-Bio-ASN1-EntrezGene
To install the port:
cd /usr/ports/biology/p5-Bio-ASN1-EntrezGene/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-Bio-ASN1-EntrezGene
  • pkg install p5-Bio-ASN1-EntrezGene
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: p5-Bio-ASN1-EntrezGene
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1539026438 SHA256 (Bio-ASN1-EntrezGene-1.73.tar.gz) = f9e778db705ce5c35ad2798e38a8490b644edfdc14253aa1b74a1f5e79fc6a4b SIZE (Bio-ASN1-EntrezGene-1.73.tar.gz) = 157307

Packages (timestamps in pop-ups are UTC):
p5-Bio-ASN1-EntrezGene
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest1.73_2,11.73_2,11.73_2,11.73_2,11.73_2,1-1.73_2,1-
FreeBSD:13:quarterly1.73_2,11.73_2,11.73_2,11.73_2,11.73_2,11.73_2,11.73_2,11.73_2,1
FreeBSD:14:latest1.73_2,11.73_2,11.73_2,11.73_2,11.73_2,11.73_2,1-1.73_2,1
FreeBSD:14:quarterly1.73_2,11.73_2,1-1.73_2,11.73_2,11.73_2,11.73_2,11.73_2,1
FreeBSD:15:latest1.73_2,11.73_2,1n/a1.73_2,1n/a1.73_2,11.73_2,11.73_2,1
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
  2. p5-BioPerl>=0 : biology/p5-BioPerl
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
  4. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. p5-Bio-Cluster>=0 : biology/p5-Bio-Cluster
  2. p5-BioPerl>=0 : biology/p5-BioPerl
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
This port is required by:
for Build
  1. biology/p5-Bio-DB-NCBIHelper
for Run
  1. biology/p5-Bio-DB-NCBIHelper

Configuration Options:
No options to configure
Options name:
biology_p5-Bio-ASN1-EntrezGene
USES:
perl5
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (12 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. http://backpan.perl.org/modules/by-module/Bio/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Bio/
  12. https://www.cpan.org/modules/by-module/Bio/
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There are no commits on branch 2022Q3 for this port