Port details on branch 2022Q3 |
- p5-Bio-FeatureIO Handler for FeatureIO
- 1.6.905 biology =0 1.6.905Version of this port present on the latest quarterly branch.
- Maintainer: sunpoet@FreeBSD.org
- Port Added: 2017-09-15 19:17:29
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- Also Listed In: perl5
- License: ART10 GPLv1+
- WWW:
- https://metacpan.org/release/Bio-FeatureIO
- Description:
- Bio::FeatureIO is an iterator subsystem for genomic sequence features.
Bio::FeatureIO is a handler module for the formats in the FeatureIO set (eg,
Bio::FeatureIO::GFF). It is the officially sanctioned way of getting at the
format objects, which most people should use.
The Bio::FeatureIO system can be thought of like biological file handles. They
are attached to filehandles with smart formatting rules (eg, GFF format, or BED
format) and can either read or write feature objects (Bio::SeqFeature objects,
or more correctly, Bio::FeatureHolderI implementing objects, of which
Bio::SeqFeature is one such object). If you want to know what to do with a
Bio::SeqFeatureI object, read Bio::SeqFeatureI.
The idea is that you request a stream object for a particular format. All the
stream objects have a notion of an internal file that is read from or written
to. A particular FeatureIO object instance is configured for either input or
output. A specific example of a stream object is the Bio::FeatureIO::gff object.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- p5-Bio-FeatureIO>0:biology/p5-Bio-FeatureIO
- To install the port:
- cd /usr/ports/biology/p5-Bio-FeatureIO/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/p5-Bio-FeatureIO
- pkg install p5-Bio-FeatureIO
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: p5-Bio-FeatureIO
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1505488503
SHA256 (Bio-FeatureIO-1.6.905.tar.gz) = 322e5757b374f2fb90b8f20bdbdc75631f5cb4d122f81a4d35c3a177cf950c7a
SIZE (Bio-FeatureIO-1.6.905.tar.gz) = 54906
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- p5-BioPerl>=0 : biology/p5-BioPerl
- p5-Tree-DAG_Node>=0 : devel/p5-Tree-DAG_Node
- p5-URI>=0 : net/p5-URI
- p5-XML-DOM>=0 : textproc/p5-XML-DOM
- p5-XML-DOM-XPath>=0 : textproc/p5-XML-DOM-XPath
- perl5>=5.32.r0<5.33 : lang/perl5.32
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- p5-BioPerl>=0 : biology/p5-BioPerl
- p5-Tree-DAG_Node>=0 : devel/p5-Tree-DAG_Node
- p5-URI>=0 : net/p5-URI
- p5-XML-DOM>=0 : textproc/p5-XML-DOM
- p5-XML-DOM-XPath>=0 : textproc/p5-XML-DOM-XPath
- perl5>=5.32.r0<5.33 : lang/perl5.32
- This port is required by:
- for Build
-
- biology/p5-BioPerl-Run
- for Run
-
- biology/p5-BioPerl-Run
Configuration Options:
- No options to configure
- Options name:
- biology_p5-Bio-FeatureIO
- USES:
- perl5
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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