Port details on branch 2022Q3 |
- p5-Bio-NEXUS Object-oriented Perl API for the NEXUS file format
- 0.78_1 biology =0 0.78_1Version of this port present on the latest quarterly branch.
- Maintainer: perl@FreeBSD.org
- Port Added: 2009-08-22 20:40:26
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- Also Listed In: perl5
- License: not specified in port
- WWW:
- https://metacpan.org/release/Bio-NEXUS
- Description:
- Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on. This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- p5-Bio-NEXUS>0:biology/p5-Bio-NEXUS
- To install the port:
- cd /usr/ports/biology/p5-Bio-NEXUS/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/p5-Bio-NEXUS
- pkg install p5-Bio-NEXUS
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: p5-Bio-NEXUS
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (Bio-NEXUS-0.78.tar.gz) = a99cda4e97fd40ee0bee05089a034e84280be9532b0300cd98ed16c303bc85dc
SIZE (Bio-NEXUS-0.78.tar.gz) = 1033563
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- p5-Clone-PP>=1.02 : devel/p5-Clone-PP
- perl5>=5.32.r0<5.33 : lang/perl5.32
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- p5-Clone-PP>=1.02 : devel/p5-Clone-PP
- perl5>=5.32.r0<5.33 : lang/perl5.32
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_p5-Bio-NEXUS
- USES:
- perl5
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|