notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)

Two new features

Two new features were added on 2020-05-30:
  1. Repology links - each port now has a link to repology.org. See issue 148 for details.
  2. Ports I maintain report - port maintainers can now subscribe to a daily report of commits to the ports they maintain. See Watch ports I maintain at Report Subscriptions. Details at issue 138
Port details
p5-Bio-SCF Read and Update SCF Chromatographic Sequence Files
1.03_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. 1.03_2Version of this port present on the latest quarterly branch.
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-08-28 23:38:55
Last Update: 2019-03-30 09:01:08
SVN Revision: 497239
Also Listed In: perl5
License: ART10 GPLv1+
Description:
SVNWeb : Homepage
pkg-plist: as obtained via: make generate-plist
Expand this list (8 items)
  1. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/catalog.mk
  2. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/LICENSE
  3. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/ART10
  4. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/GPLv1+
  5. lib/perl5/site_perl/mach/5.28/Bio/SCF/Arrays.pm
  6. lib/perl5/site_perl/mach/5.28/Bio/SCF.pm
  7. lib/perl5/site_perl/mach/5.28/auto/Bio/SCF/SCF.so
  8. lib/perl5/site_perl/man/man3/Bio::SCF.3.gz
Collapse this list.
Dependency lines:
  • p5-Bio-SCF>0:biology/p5-Bio-SCF
To install the port: cd /usr/ports/biology/p5-Bio-SCF/ && make install clean
To add the package: pkg install p5-Bio-SCF
PKGNAME: p5-Bio-SCF
Flavors: there is no flavor information for this port.
distinfo:
Packages: (move your mouse over the cells for more information)
p5-Bio-SCF
ABIlatestquarterly
FreeBSD:11:aarch641.03_11.03_2
FreeBSD:11:amd641.03_21.03_2
FreeBSD:11:armv61.03_11.03_2
FreeBSD:11:i3861.03_21.03_2
FreeBSD:11:mips1.03_1-
FreeBSD:11:mips641.03_1-
FreeBSD:12:aarch641.03_21.03_2
FreeBSD:12:amd641.03_21.03_2
FreeBSD:12:armv61.03_21.03_2
FreeBSD:12:armv71.03_21.03_2
FreeBSD:12:i3861.03_21.03_2
FreeBSD:12:mips--
FreeBSD:12:mips64--
FreeBSD:12:powerpc64-1.03_2
FreeBSD:13:aarch641.03_2-
FreeBSD:13:amd641.03_2-
FreeBSD:13:armv61.03_2-
FreeBSD:13:armv71.03_2-
FreeBSD:13:i3861.03_2-
FreeBSD:13:mips--
FreeBSD:13:mips641.03_2-
FreeBSD:13:powerpc641.03_2-
 

Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. scf.h : biology/iolib
  2. perl5>=5.28.r1<5.29 : lang/perl5.28
  3. perl5>=5.28.r1<5.29 : lang/perl5.28
Runtime dependencies:
  1. scf.h : biology/iolib
  2. perl5>=5.28.r1<5.29 : lang/perl5.28
This port is required by:
for Build
  1. biology/p5-Bio-Graphics
for Run
  1. biology/p5-Bio-Graphics

Configuration Options

USES:

Master Sites:
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. http://backpan.perl.org/modules/by-module/Bio/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Bio/
  12. https://www.cpan.org/modules/by-module/Bio/

Number of commits found: 16

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
30 Mar 2019 09:01:08
Original commit files touched by this commit  1.03_2
Revision:497239
amdmi3 search for other commits by this committer
- Add LICENSE
- Switch to USES=localbase

Approved by:	portmgr blanket
06 Oct 2018 13:06:45
Original commit files touched by this commit  1.03_2
Revision:481365
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
28 Sep 2018 18:47:50
Original commit files touched by this commit  1.03_2
Revision:480878
danilo search for other commits by this committer
- Update to 1-14-10
- Move USES to make portlint happy
27 May 2018 20:15:20
Original commit files touched by this commit  1.03_1
Revision:470993
sunpoet search for other commits by this committer
Update WWW

search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl
01 Apr 2016 13:29:17
Original commit files touched by this commit  1.03_1
Revision:412344
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
26 Nov 2014 13:08:38
Original commit files touched by this commit  1.03_1
Revision:373448
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Oct 2014 07:10:48
Original commit files touched by this commit  1.03
Revision:371237
bapt search for other commits by this committer
Cleanup plist
10 Jun 2014 12:14:14
Original commit files touched by this commit  1.03
Revision:357300
mat search for other commits by this committer
Remove all the bootstrap files (.bs) from the plists.

Starting with perl 5.20, they're not installed any more if empty,
and on FreeBSD, they're (always ?) empty.

PR:		190681
Submitted by:	mat
Exp-Run by:	antoine
Sponsored by:	Absolight
06 Jan 2014 09:44:20
Original commit files touched by this commit  1.03
Revision:338851
az search for other commits by this committer
- add stage support

Approved by:	portmgr (blanket infrastructure)
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.03
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
06 Aug 2013 08:50:49
Original commit files touched by this commit  1.03
Revision:324306
az search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header

Approved by:	wen@ (maintainer)
01 Jun 2013 14:22:36
Original commit files touched by this commit  1.03
Revision:319570
wen search for other commits by this committer
- Trim Makefile headers
21 Jan 2012 17:40:15
Original commit files touched by this commit  1.03

eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.03

miwi search for other commits by this committer
- Get Rid MD5 support
09 Jan 2010 01:21:21
Original commit files touched by this commit  1.03

wen search for other commits by this committer
- Update to 1.03
- Update my mail address to FreeBSD
28 Aug 2009 23:36:09
Original commit files touched by this commit  1.01

miwi search for other commits by this committer
Bio::SCF module allows you to read and update (in a restricted
way) SCF chromatographic sequence files. It is an interface to
Roger Staden's io-lib. See the installation directions for further
instructions.

WWW:    http://search.cpan.org/dist/Bio-SCF/

PR:             ports/138263
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 16

Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
The latest upgrade!
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
typo3-10Aug 04
typo3-9Aug 04
libX11Aug 01
xephyrAug 01
xorg-dmxAug 01
xorg-nestserverAug 01
xorg-serverAug 01
xorg-vfbserverAug 01
xwaylandAug 01
python38Jul 31
arkJul 30
chromiumJul 28
freerdpJul 28
libsndfileJul 28
zeekJul 28

13 vulnerabilities affecting 77 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last updated:
2020-08-04 10:33:08


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)
Traffic

Calculated hourly:
Port count 40257
Broken 91
Deprecated 599
Ignore 327
Forbidden 5
Restricted 147
No CDROM 76
Vulnerable 20
Expired 3
Set to expire 570
Interactive 0
new 24 hours 2
new 48 hours4
new 7 days42
new fortnight73
new month141

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2020 Dan Langille. All rights reserved.