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Port details
p5-Bio-SCF Read and Update SCF Chromatographic Sequence Files
1.03_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
1.03Version of this port present on the latest quarterly branch.
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-08-28 23:38:55
Last Update: 2019-03-30 09:01:08
SVN Revision: 497239
Also Listed In: perl5
License: ART10 GPLv1+
Bio::SCF module allows you to read and update (in a restricted
way) SCF chromatographic sequence files. It is an interface to
Roger Staden's io-lib. See the installation directions for further
instructions.

WWW: https://metacpan.org/release/Bio-SCF
SVNWeb : Homepage
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (8 items)
  1. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/catalog.mk
  2. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/LICENSE
  3. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/ART10
  4. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/GPLv1+
  5. lib/perl5/site_perl/mach/5.28/Bio/SCF/Arrays.pm
  6. lib/perl5/site_perl/mach/5.28/Bio/SCF.pm
  7. lib/perl5/site_perl/mach/5.28/auto/Bio/SCF/SCF.so
  8. lib/perl5/site_perl/man/man3/Bio::SCF.3.gz
  9. Collapse this list.
Dependency lines:
  • p5-Bio-SCF>0:biology/p5-Bio-SCF

To install the port: cd /usr/ports/biology/p5-Bio-SCF/ && make install clean
To add the package: pkg install p5-Bio-SCF

PKGNAME: p5-Bio-SCF

There is no flavor information for this port.

distinfo:

SHA256 (Bio-SCF-1.03.tar.gz) = 519203098d7d5cf9aae32f65c52223d38b9c0dfbbfaeda10c1ea74ecd1d6295c
SIZE (Bio-SCF-1.03.tar.gz) = 96549


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. scf.h : biology/iolib
  2. perl5>=5.28.r1<5.29 : lang/perl5.28
  3. perl5>=5.28.r1<5.29 : lang/perl5.28
Runtime dependencies:
  1. scf.h : biology/iolib
  2. perl5>=5.28.r1<5.29 : lang/perl5.28

This port is required by:

for Build for Run
Configuration Options
     No options to configure

USES:
perl5 localbase:ldflags

Master Sites:
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. http://backpan.perl.org/modules/by-module/Bio/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Bio/
  12. https://www.cpan.org/modules/by-module/Bio/

Number of commits found: 16

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
30 Mar 2019 09:01:08
Original commit files touched by this commit  1.03_2
Revision:497239
amdmi3 search for other commits by this committer
- Add LICENSE
- Switch to USES=localbase

Approved by:	portmgr blanket
06 Oct 2018 13:06:45
Original commit files touched by this commit  1.03_2
Revision:481365
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
28 Sep 2018 18:47:50
Original commit files touched by this commit  1.03_2
Revision:480878
danilo search for other commits by this committer
- Update to 1-14-10
- Move USES to make portlint happy
27 May 2018 20:15:20
Original commit files touched by this commit  1.03_1
Revision:470993
sunpoet search for other commits by this committer
Update WWW

search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl
01 Apr 2016 13:29:17
Original commit files touched by this commit  1.03_1
Revision:412344
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
26 Nov 2014 13:08:38
Original commit files touched by this commit  1.03_1
Revision:373448
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
20 Oct 2014 07:10:48
Original commit files touched by this commit  1.03
Revision:371237
bapt search for other commits by this committer
Cleanup plist
10 Jun 2014 12:14:14
Original commit files touched by this commit  1.03
Revision:357300
mat search for other commits by this committer
Remove all the bootstrap files (.bs) from the plists.

Starting with perl 5.20, they're not installed any more if empty,
and on FreeBSD, they're (always ?) empty.

PR:		190681
Submitted by:	mat
Exp-Run by:	antoine
Sponsored by:	Absolight
06 Jan 2014 09:44:20
Original commit files touched by this commit  1.03
Revision:338851
az search for other commits by this committer
- add stage support

Approved by:	portmgr (blanket infrastructure)
20 Sep 2013 15:55:44
Original commit files touched by this commit  1.03
Revision:327709
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
06 Aug 2013 08:50:49
Original commit files touched by this commit  1.03
Revision:324306
az search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header

Approved by:	wen@ (maintainer)
01 Jun 2013 14:22:36
Original commit files touched by this commit  1.03
Revision:319570
wen search for other commits by this committer
- Trim Makefile headers
21 Jan 2012 17:40:15
Original commit files touched by this commit  1.03

eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
19 Mar 2011 12:38:54
Original commit files touched by this commit  1.03

miwi search for other commits by this committer
- Get Rid MD5 support
09 Jan 2010 01:21:21
Original commit files touched by this commit  1.03

wen search for other commits by this committer
- Update to 1.03
- Update my mail address to FreeBSD
28 Aug 2009 23:36:09
Original commit files touched by this commit  1.01

miwi search for other commits by this committer
Bio::SCF module allows you to read and update (in a restricted
way) SCF chromatographic sequence files. It is an interface to
Roger Staden's io-lib. See the installation directions for further
instructions.

WWW:    http://search.cpan.org/dist/Bio-SCF/

PR:             ports/138263
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 16

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