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We just rebooted with several updates: * new HMTLify code * no port maintainer is now highly visible (e.g. https://freshports.org/security/sssd/) * fixed search logic error when using plain/ text details at https://github.com/FreshPorts/freshports/releases/tag/2.2.34
Port details
p5-Bio-SCF Read and Update SCF Chromatographic Sequence Files
1.03_2 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout Version of this port present on the latest quarterly branch.
Maintainer: wen@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2009-08-28 23:38:55
Last Update: 2022-09-07 21:58:51
Commit Hash: fb16dfe
Also Listed In: perl5
License: ART10 GPLv1+
Description:
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb
pkg-plist: as obtained via: make generate-plist
Expand this list (11 items)
Collapse this list.
  1. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/catalog.mk
  2. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/LICENSE
  3. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/ART10
  4. /usr/local/share/licenses/p5-Bio-SCF-1.03_2/GPLv1+
  5. lib/perl5/site_perl/mach/5.32/Bio/SCF/Arrays.pm
  6. lib/perl5/site_perl/mach/5.32/Bio/SCF.pm
  7. lib/perl5/site_perl/mach/5.32/auto/Bio/SCF/SCF.so
  8. lib/perl5/site_perl/man/man3/Bio::SCF.3.gz
  9. @owner
  10. @group
  11. @mode
Collapse this list.
Dependency lines:
  • p5-Bio-SCF>0:biology/p5-Bio-SCF
To install the port:
cd /usr/ports/biology/p5-Bio-SCF/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-Bio-SCF
  • pkg install p5-Bio-SCF
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: p5-Bio-SCF
Flavors: there is no flavor information for this port.
distinfo:

Packages (timestamps in pop-ups are UTC):
p5-Bio-SCF
ABIlatestquarterly
FreeBSD:11:aarch641.03_11.03_2
FreeBSD:11:amd641.03_21.03_2
FreeBSD:11:armv61.03_11.03_2
FreeBSD:11:i3861.03_21.03_2
FreeBSD:11:mipspkg-falloutpkg-fallout
FreeBSD:11:mips641.03_1pkg-fallout
FreeBSD:12:aarch641.03_21.03_2
FreeBSD:12:amd641.03_21.03_2
FreeBSD:12:armv61.03_21.03_2
FreeBSD:12:armv71.03_21.03_2
FreeBSD:12:i3861.03_21.03_2
FreeBSD:12:mipspkg-falloutpkg-fallout
FreeBSD:12:mips64pkg-falloutpkg-fallout
FreeBSD:12:powerpc64pkg-fallout1.03_2
FreeBSD:13:aarch641.03_21.03_2
FreeBSD:13:amd641.03_21.03_2
FreeBSD:13:armv61.03_21.03_2
FreeBSD:13:armv71.03_21.03_2
FreeBSD:13:i3861.03_21.03_2
FreeBSD:13:mipspkg-falloutpkg-fallout
FreeBSD:13:mips641.03_21.03_2
FreeBSD:13:powerpc641.03_21.03_2
FreeBSD:13:riscv64pkg-fallout1.03_2
FreeBSD:14:aarch641.03_2pkg-fallout
FreeBSD:14:amd641.03_2pkg-fallout
FreeBSD:14:armv61.03_2pkg-fallout
FreeBSD:14:armv71.03_2pkg-fallout
FreeBSD:14:i3861.03_2pkg-fallout
FreeBSD:14:mipspkg-falloutpkg-fallout
FreeBSD:14:mips64pkg-falloutpkg-fallout
FreeBSD:14:powerpc641.03_2pkg-fallout
FreeBSD:14:riscv641.03_2pkg-fallout
 
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. scf.h : biology/iolib
  2. perl5>=5.32.r0<5.33 : lang/perl5.32
  3. perl5>=5.32.r0<5.33 : lang/perl5.32
Runtime dependencies:
  1. scf.h : biology/iolib
  2. perl5>=5.32.r0<5.33 : lang/perl5.32
This port is required by:
for Build
  1. biology/p5-Bio-Graphics
for Run
  1. biology/p5-Bio-Graphics

Configuration Options:
Options name:
USES:
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (12 items)
Collapse this list.
  1. ftp://ftp.auckland.ac.nz/pub/perl/CPAN/modules/by-module/Bio/
  2. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/
  3. ftp://ftp.cpan.org/pub/CPAN/modules/by-module/Bio/
  4. ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module/Bio/
  5. ftp://ftp.kddlabs.co.jp/lang/perl/CPAN/modules/by-module/Bio/
  6. ftp://ftp.mirrorservice.org/sites/cpan.perl.org/CPAN/modules/by-module/Bio/
  7. http://backpan.perl.org/modules/by-module/Bio/
  8. http://ftp.jaist.ac.jp/pub/CPAN/modules/by-module/Bio/
  9. http://ftp.twaren.net/Unix/Lang/CPAN/modules/by-module/Bio/
  10. https://cpan.metacpan.org/modules/by-module/
  11. https://cpan.metacpan.org/modules/by-module/Bio/
  12. https://www.cpan.org/modules/by-module/Bio/
Collapse this list.

Number of commits found: 20

Commit History - (may be incomplete: for full details, see links to repositories near top of page)
CommitCreditsLog message
07 Sep 2022 21:58:51
commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4commit hash:fb16dfecae4a6efac9f3a78e0b759fb7a3c53de4 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
1.03_2
07 Sep 2022 21:10:59
commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52 files touched by this commit
Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.03_2
20 Jul 2022 14:20:57
commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671commit hash:37526bbd4e50616d87f70e1c788ae4895d88d671 files touched by this commit
Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.03_2
06 Apr 2021 14:31:07
commit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344ebcommit hash:305f148f482daf30dcf728039d03d019f88344eb files touched by this commit
Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
1.03_2
30 Mar 2019 09:01:08
Revision:497239Original commit files touched by this commit
amdmi3 search for other commits by this committer
- Add LICENSE
- Switch to USES=localbase

Approved by:	portmgr blanket
1.03_2
06 Oct 2018 13:06:45
Revision:481365Original commit files touched by this commit
des search for other commits by this committer
Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
1.03_2
28 Sep 2018 18:47:50
Revision:480878Original commit files touched by this commit
danilo search for other commits by this committer
- Update to 1-14-10
- Move USES to make portlint happy
1.03_1
27 May 2018 20:15:20
Revision:470993Original commit files touched by this commit
sunpoet search for other commits by this committer
Update WWW

search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl
1.03_1
01 Apr 2016 13:29:17
Revision:412344Original commit files touched by this commit
mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
1.03_1
26 Nov 2014 13:08:38
Revision:373448Original commit files touched by this commit
mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
1.03
20 Oct 2014 07:10:48
Revision:371237Original commit files touched by this commit
bapt search for other commits by this committer
Cleanup plist
1.03
10 Jun 2014 12:14:14
Revision:357300Original commit files touched by this commit
mat search for other commits by this committer
Remove all the bootstrap files (.bs) from the plists.

Starting with perl 5.20, they're not installed any more if empty,
and on FreeBSD, they're (always ?) empty.

PR:		190681
Submitted by:	mat
Exp-Run by:	antoine
Sponsored by:	Absolight
1.03
06 Jan 2014 09:44:20
Revision:338851Original commit files touched by this commit
az search for other commits by this committer
- add stage support

Approved by:	portmgr (blanket infrastructure)
1.03
20 Sep 2013 15:55:44
Revision:327709Original commit files touched by this commit
bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
1.03
06 Aug 2013 08:50:49
Revision:324306Original commit files touched by this commit
az search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header

Approved by:	wen@ (maintainer)
1.03
01 Jun 2013 14:22:36
Revision:319570Original commit files touched by this commit
wen search for other commits by this committer
- Trim Makefile headers
1.03
21 Jan 2012 17:40:15
Original commit files touched by this commit
eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
1.03
19 Mar 2011 12:38:54
Original commit files touched by this commit
miwi search for other commits by this committer
- Get Rid MD5 support
1.03
09 Jan 2010 01:21:21
Original commit files touched by this commit
wen search for other commits by this committer
- Update to 1.03
- Update my mail address to FreeBSD
1.01
28 Aug 2009 23:36:09
Original commit files touched by this commit
miwi search for other commits by this committer
Bio::SCF module allows you to read and update (in a restricted
way) SCF chromatographic sequence files. It is an interface to
Roger Staden's io-lib. See the installation directions for further
instructions.

WWW:    http://search.cpan.org/dist/Bio-SCF/

PR:             ports/138263
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found: 20