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Port details on branch 2022Q3
p5-TrimGalore Wrapper around Cutadapt and FastQC for adapter and quality trimming
0.6.5 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.6.5Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2017-12-09 13:23:40
Last Update: 2024-04-06 00:12:17
Commit Hash: f86a4bf
Also Listed In: perl5 python
License: GPLv3
WWW:
https://github.com/FelixKrueger/TrimGalore
Description:
Wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (26 items)
Collapse this list.
  1. /usr/local/share/licenses/p5-TrimGalore-0.6.5/catalog.mk
  2. /usr/local/share/licenses/p5-TrimGalore-0.6.5/LICENSE
  3. /usr/local/share/licenses/p5-TrimGalore-0.6.5/GPLv3
  4. bin/trim_galore
  5. bin/trim_galore-test
  6. share/TrimGalore/test_files/4_seqs_with_Ns.fastq.gz
  7. share/TrimGalore/test_files/clock_10K_R1.fastq.gz
  8. share/TrimGalore/test_files/clock_10K_R2.fastq.gz
  9. share/TrimGalore/test_files/colorspace_file.fastq
  10. share/TrimGalore/test_files/empty_file.fastq
  11. share/TrimGalore/test_files/illumina_100K.fastq.gz
  12. share/TrimGalore/test_files/illumina_100K.fastq.gz_trimming_report.txt
  13. share/TrimGalore/test_files/illumina_10K.fastq.gz
  14. share/TrimGalore/test_files/illumina_10K.fastq.gz_trimming_report.txt
  15. share/TrimGalore/test_files/illumina_10K_trimmed.fq.gz
  16. share/TrimGalore/test_files/nextera_100K.fastq.gz
  17. share/TrimGalore/test_files/nextera_100K.fastq.gz_trimming_report.txt
  18. share/TrimGalore/test_files/smallRNA_100K.fastq.gz
  19. share/TrimGalore/test_files/smallRNA_100K.fastq.gz_trimming_report.txt
  20. share/TrimGalore/test_files/smallRNA_100K_R1.fastq.gz_trimming_report.txt
  21. share/TrimGalore/test_files/smallRNA_100K_R2.fastq.gz
  22. share/TrimGalore/test_files/smallRNA_100K_R2.fastq.gz_trimming_report.txt
  23. share/TrimGalore/test_files/truncated.fq.gz
  24. @owner
  25. @group
  26. @mode
Collapse this list.
Dependency lines:
  • p5-TrimGalore>0:biology/p5-TrimGalore
To install the port:
cd /usr/ports/biology/p5-TrimGalore/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/p5-TrimGalore
  • pkg install p5-TrimGalore
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: p5-TrimGalore
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1574700536 SHA256 (FelixKrueger-TrimGalore-0.6.5_GH0.tar.gz) = 3e92c2f5b6147a30f774a5bea4b344aebb014d6dd9b3e9b55a72046b04485783 SIZE (FelixKrueger-TrimGalore-0.6.5_GH0.tar.gz) = 26827890
Packages (timestamps in pop-ups are UTC):
p5-TrimGalore
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.6.50.6.5-0.6.50.6.5---
FreeBSD:13:quarterly0.6.50.6.5-0.6.50.6.5-0.6.50.6.5
FreeBSD:14:latest0.6.50.6.50.6.5-0.6.5--0.6.5
FreeBSD:14:quarterly0.6.50.6.5--0.6.5-0.6.50.6.5
FreeBSD:15:latest0.6.50.6.5n/a-n/a-0.6.50.6.5
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Runtime dependencies:
  1. py39-cutadapt>=2.5 : biology/py-cutadapt@py39
  2. fastqc>0 : biology/fastqc
  3. perl5>=5.36<5.37 : lang/perl5.36
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_p5-TrimGalore
USES:
perl5 python:env shebangfix
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/FelixKrueger/TrimGalore/tar.gz/0.6.5?dummy=/
Collapse this list.

There are no commits on branch 2022Q3 for this port
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